Table 3. The statistics of the B-box domain lost in group A and group C COL genes of angiosperm species.
Group A | Group B | Group C | Total | Percentage* | Percentage* | |||
---|---|---|---|---|---|---|---|---|
Species | Two B-box | One B-box | One B-box | Two B-box | One B-box | Gene Number | Group A-lost | Group C-lost |
Aco | 2 | 0 | 1 | 5 | 0 | 8 | 0.00 | 0.00 |
Aly | 6 | 0 | 4 | 5 | 3 | 18 | 0.00 | 16.67 |
Ath | 6 | 0 | 4 | 7 | 0 | 17 | 0.00 | 0.00 |
Bdi | 5 | 2 | 3 | 2 | 3 | 15 | 13.33 | 20.00 |
Bra | 7 | 1 | 6 | 8 | 3 | 25 | 4.00 | 12.00 |
Ccl | 3 | 1 | 2 | 8 | 0 | 14 | 7.14 | 0.00 |
Cpa | 3 | 0 | 2 | 5 | 0 | 10 | 0.00 | 0.00 |
Cru | 6 | 0 | 4 | 5 | 1 | 16 | 0.00 | 6.25 |
Csa | 4 | 1 | 3 | 5 | 0 | 13 | 7.69 | 0.00 |
Csi | 3 | 1 | 2 | 12 | 0 | 18 | 5.56 | 0.00 |
Egr | 3 | 0 | 2 | 5 | 0 | 10 | 0.00 | 0.00 |
Fve | 3 | 0 | 2 | 2 | 1 | 8 | 0.00 | 12.50 |
Gma | 8 | 0 | 6 | 12 | 0 | 26 | 0.00 | 0.00 |
Gra | 6 | 2 | 3 | 12 | 0 | 23 | 8.70 | 0.00 |
Lus | 2 | 2 | 2 | 8 | 1 | 15 | 13.33 | 6.67 |
Mdo | 6 | 0 | 5 | 6 | 0 | 17 | 0.00 | 0.00 |
Mes | 7 | 0 | 3 | 7 | 1 | 18 | 0.00 | 5.56 |
Mgu | 3 | 1 | 3 | 4 | 1 | 12 | 8.33 | 8.33 |
Mtr | 4 | 0 | 1 | 4 | 1 | 10 | 0.00 | 10.00 |
Osa | 4 | 3 | 3 | 2 | 5 | 17 | 17.65 | 29.41 |
Ppe | 3 | 0 | 2 | 5 | 0 | 10 | 0.00 | 0.00 |
Ptr | 6 | 0 | 3 | 7 | 3 | 19 | 0.00 | 15.79 |
Pvi | 6 | 3 | 2 | 1 | 6 | 18 | 16.67 | 33.33 |
Pvu | 4 | 0 | 4 | 6 | 0 | 14 | 0.00 | 0.00 |
Rco | 3 | 0 | 2 | 4 | 1 | 10 | 0.00 | 10.00 |
Sbi | 5 | 1 | 3 | 3 | 4 | 16 | 6.25 | 25.00 |
Sit | 4 | 1 | 5 | 4 | 1 | 15 | 6.67 | 6.67 |
Sly | 5 | 0 | 3 | 5 | 0 | 13 | 0.00 | 0.00 |
Stu | 5 | 0 | 2 | 9 | 0 | 16 | 0.00 | 0.00 |
Tca | 4 | 0 | 2 | 6 | 0 | 12 | 0.00 | 0.00 |
Tha | 4 | 0 | 4 | 7 | 1 | 16 | 0.00 | 6.25 |
Vvi | 2 | 0 | 1 | 3 | 0 | 6 | 0.00 | 0.00 |
Zma | 5 | 2 | 5 | 4 | 1 | 17 | 11.76 | 5.88 |
Note: The abbreviations represent the species as follows: Aco, Aquilegia coerulea; Aly, Arabidopsis lyrata; Ath, Arabidopsis thaliana; Bdi, Brachypodium distachyon; Bra, Brassica rapa; Ccl, Citrus clementina; Cpa, Carica papaya; Cru, Capsella rubella; Csa, Cucumis sativus; Csi, Citrus sinensis; Egr, Eucalyptus grandis; Fve, Fragaria vesca; Gma, Glycine max; Gra, Gossypium raimondii; Lus, Linum usitatissimum; Mdo, Malus domestica; Mes, Manihot esculenta; Mgu, Mimulus guttatus; Mtr, Medicago truncatula; Osa, Oryza sativa; Ppe, Prunus persica; Ptr, Populus trichocarpa; Pvi, Panicum virgatum; Pvu, Phaseolus vulgaris; Rco, Ricinus communis; Sbi, Sorghum bicolor; Sit, Setaria italica; Sly, Solanum lycopersicum; Stu, Solanum tuberosum; Tca, Theobroma cacao; Tha, Thellungiella halophila; Vvi, Vitis vinifera; Zma, Zea mays.
*The percentage of B-box loss in Group A or Group C = Number of genes that contained only one B-box domain in Group A or Group C/All the COL genes in the species.