Table I. The 72 high-confidence KAN1 targets identified through meta-analysis.
Microarray data were retrieved from Reinhart et al. (2013).
| Arabidopsis Genome Initiative Code | Annotation | ChIP-Seq Binding Site | RNA-Seq | Microarray |
|---|---|---|---|---|
| kb to gene | fold change | |||
| At1g01120 | KCS1 | −2.3 | −0.1 | 0.14 | 0.36 |
| At1g01140 | CIPK9 | −0.9 | −0.4 | 0.42 | 0.37 |
| At1g01490 | HMT superfamily | −1.0 | −0.3 | 0.0 | 0.5 | 0.24 | 0.26 |
| At1g21590 | Protein kinase | −0.5 | 0.19 | 0.37 |
| At1g23090 | AST91 | −4.6 | −3.1 | 0.15 | 0.33 |
| At1g25550 | Myb-like transcription factor family | −0.3 | 0.5 | 0.25 | 0.19 |
| At1g25560 | TEMPRANILLO1 (TEM1) | −3.1 | −2.1 | −0.9 | 3.0 | 0.32 | 0.23 |
| At1g28660 | GDSL-like superfamily | −1.0 | −0.2 | 0.47 | 0.39 |
| At1g33240 | AT-GTL1 | 0.2 | 0.54 | 0.48 |
| At1g35350 | PHO1-H8 | −1.8 | −0.2 | 0.43 | 0.23 |
| At1g51805 | LRR kinase family | −0.4 | 0.07 | 0.08 |
| At1g52290 | PERK15 | −0.1 | 0.16 | 0.14 |
| At1g61660 | BHLH112 | −10.7 | −3.2 | −1.4 | 0.43 | 0.46 |
| At1g66840 | PMI2 | −0.2 | 0.13 | 0.26 |
| At1g69760 | Unknown protein | −6.1 | −3.0 | −2.4 | 0.13 | 0.29 |
| At1g71880 | SUC1 | −10.1 | −5.9 | −5.5 | −4.6 | 0.09 | 0.46 |
| At1g72450 | JAZ6 | −2.1 | −1.3 | 0.27 | 0.22 |
| At1g76990 | ACR3 | −3.6 | −1.3 | 0.33 | 0.50 |
| At2g01420 | PIN4 | −0.4 | 0.9 | 0.16 | 0.21 |
| At2g02950 | PKS1 | −0.3 | 0.29 | 0.21 |
| At2g16400 | BLH7 | −0.4 | 0.34 | 0.33 |
| At2g17820 | ATHK1 | −0.2 | 0.18 | 0.31 |
| At2g21210 | SAUR6 | −0.2 | 0.58 | 0.45 |
| At2g27050 | EIL1 | 0.4 | 0.50 | 0.61 |
| At2g30520 | RPT2 | −3.2 | −1.0 | 0.61 | 0.44 |
| At2g30990 | Unknown protein | −0.9 | −0.2 | 0.44 | 0.39 |
| At2g31070 | TCP10 | −0.1 | 0.55 | 0.23 |
| At2g38310 | PYL4 | 0.6 | 1.2 | 0.40 | 0.46 |
| At2g39360 | Protein kinase superfamily | −0.3 | 2.2 | 0.44 | 0.29 |
| At2g40270 | Protein kinase superfamily | −0.8 | −0.2 | 0.9 | 0.38 | 0.37 |
| At2g41940 | ZFP8 | −3.9 | −2.9 | 1.6 | 0.16 | 0.23 |
| At2g42690 | α/β-Hydrolase superfamily | −0.2 | 0.29 | 0.51 |
| At2g43820 | GT | −1.0 | 0.56 | 0.34 |
| At3g05120 | ATGID1A | −1.7 | −0.6 | −0.1 | 0.30 | 0.42 |
| At3g06750 | Hyp-rich glycoprotein family | −1.8 | −0.7 | 0.0 | 0.9 | 0.26 | 0.30 |
| At3g13110 | ATSERAT2 | −3.1 | 0.44 | 0.43 |
| At3g15570 | NPH3 family protein | −1.1 | 0.11 | 0.07 |
| At3g19850 | NPH3 family protein | −1.0 | 0.04 | 0.03 |
| At3g19930 | STP4 | −1.7 | −0.9 | 0.40 | 0.50 |
| At3g23820 | GAE6 | −9.4 | −8.0 | −3.9 | −2.5 | −1.3 | 0.38 | 0.48 |
| At3g49220 | PME34 | −0.2 | 0.0 | 0.0 | 0.15 | 0.26 |
| At3g55560 | AGF2 | −1.1 | 0.32 | 0.46 |
| At3g58120 | ATBZIP61 | −1.2 | 0.46 | 0.42 |
| At3g61460 | BRASSINOSTEROID-RESPONSIVE RING-H2 (BRH1) | −2.3 | −0.4 | 0.40 | 0.29 |
| At4g16980 | Arabinogalactan protein family | −0.4 | 0.3 | 0.34 | 0.41 |
| At4g16990 | RLM3 | −2.0 | 0.19 | 0.26 |
| At4g18010 | IP5PII | −9.0 | −7.3 | −6.1 | −3.5 | −2.2 | 0.0 | 0.36 | 0.14 |
| At4g18340 | Glycosyl hydrolase superfamily | −1.5 | 0.30 | 0.27 |
| At4g22190 | Unknown protein | −3.0 | −1.8 | 0.30 | 0.32 |
| At4g24060 | Zinc finger family protein | −0.1 | 1.5 | 0.31 | 0.50 |
| At4g24660 | ATHB22 | −1.5 | −0.9 | 0.22 | 0.20 |
| At4g25620 | Hyp-rich glycoprotein family | −3.5 | −1.7 | 0.0 | 0.25 | 0.24 |
| At4g25990 | CIL | −3.0 | −1.9 | 0.12 | 0.18 |
| At4g27300 | SD11 | −3.4 | −0.3 | 0.20 | 0.19 |
| At4g33050 | EDA39 | 0.0 | 2.8 | 0.08 | 0.22 |
| At4g34220 | LRR protein kinase family | −1.5 | −1.0 | 0.05 | 0.12 |
| At4g37590 | NPY5 | −2.0 | −1.5 | 0.8 | 0.50 | 0.62 |
| At4g38840 | SAUR14 | −0.3 | 0.48 | 0.32 |
| At5g03150 | JACKDAW (JKD) | −3.1 | 0.22 | 0.28 |
| At5g09850 | MED26C | 0.0 | 0.46 | 0.59 |
| At5g11090 | Ser-rich protein-related | 1.6 | 2.3 | 4.3 | 0.41 | 0.35 |
| At5g17860 | CAX7 | −1.1 | −0.2 | 0.0 | 0.7 | 0.17 | 0.08 |
| At5g28300 | GT2L | −0.3 | 0.7 | 0.44 | 0.36 |
| At5g40450 | Unknown protein | −5.1 | −3.6 | −2.7 | −1.5 | −0.2 | 0.24 | 0.41 |
| At5g47370 | HAT2 | −0.7 | −0.1 | 0.35 | 0.44 |
| At5g47560 | ATTDT | −2.0 | −0.9 | 0.0 | 0.64 | 0.29 |
| At5g52900 | MAKR6 | −0.8 | 2.3 | 4.4 | 0.07 | 0.21 |
| At5g54250 | ATCNGC4 | −1.5 | 0.4 | 0.27 | 0.18 |
| At5g59780 | MYB59 | −6.0 | −2.6 | −1.3 | 0.36 | 0.32 |
| At5g61590 | ERF107 | −0.7 | −0.2 | 0.08 | 0.03 |
| At5g63410 | LRR protein kinase family | −1.3 | −0.2 | 0.22 | 0.30 |
| At5g67440 | NPY3 | −0.5 | 0.0 | 0.1 | 0.36 | 0.48 |