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. 2015 Sep 29;15:210. doi: 10.1186/s12862-015-0491-1

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© Barthet et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Summarized phylogeny of Orchidaceae determined using matK nucleotide sequence alignment based on alternative initiation codon. The tree is rooted with members of the Asparagales monocot families Asteliaceae (Astelia alpina, Milligania stylosa), Blandfordiaceae (Blandfordia grandiflora), Boryaceae (Borya septentrionalis), Hypoxidaceae (Hypoxis hemerocallidea, Spiloxene serrate,), and Lanariaceae (Lanaria lanata). Asterisks indicate evolutionary lineages that utilize the consensus initiation codon for MatK expression. Lineages lacking asterisks utilize the alternative initiation codon. Relationships were constructed using the maximum likelihood method RAxML in the CIPRES portal (http://www.phylo.org) [70] applying the default settings and conducting 1000 replicates. Bootstrap values are noted on the nodes