Table 3.
Evaluation of the computational complexity. Mean CPU time in seconds of each reconstruction method on the different datasources in a 2 x Intel Xeon E5 2670 8C (2.6 GHz)
| Datasource | ARACNE | C3NET | CLR | GeneNet | Genie3 | MRNET | MutRank | MRNETB | PCIT | Zscore |
|---|---|---|---|---|---|---|---|---|---|---|
| R1 | 2.483 | 2.367 | 0.409 | 9.377 | 1310.486 | 7.200 | 0.638 | 11.195 | 11.352 | 0.086 |
| S1 | 0.106 | 0.215 | 0.059 | 0.917 | 183.266 | 0.120 | 0.056 | 0.406 | 0.333 | 0.010 |
| S2 | 1.775 | 1.904 | 0.349 | 9.504 | 950.648 | 7.101 | 0.585 | 10.907 | 10.898 | 0.091 |
| G1 | 10.442 | 6.795 | 1.079 | 29.612 | 2839.319 | 31.385 | 1.865 | 46.255 | 47.106 | 0.260 |
| G2 | 25.551 | 12.189 | 1.750 | 53.792 | 4115.408 | 60.143 | 3.431 | 100.375 | 103.085 | 0.418 |