Table 5.
Genetic variation of candidate genes
Haplotypes are inferred from the connection of SNPs within a gene using PHASE software, and genotype of each individual is the best reconstruction of haplotypes with the highest probability. Nucleotide diversity is represented by π.
| Transcripts | SNP number | Haplotype number | Genotype number | π×1000 in JH | π×1000 in QG |
|---|---|---|---|---|---|
| MluLR17106 | 1 | 2 | 3 | 0.412 | 0.200 |
| MluLR2876 | 5 | 11 | 21 | 0.618 | 0.480 |
| MluLR16886 | 4 | 12 | 15 | 0.509 | 0.500 |
| MluLR7126 | 4 | 12 | 18 | 0.349 | 0.406 |
| MluLR5294 | 3 | 5 | 9 | 0.525 | 0.611 |
| MluLR12213 | 7 | 34 | 53 | 1.656 | 1.667 |
| MluLR12611 | 7 | 21 | 26 | 1.693 | 1.727 |
| MluLR13061 | 3 | 5 | 8 | 0.788 | 0.712 |
| MluLR17624 | 5 | 15 | 28 | 1.269 | 1.113 |
| MluLR16034 | 5 | 9 | 21 | 1.392 | 1.185 |
| MluLR4945 | 5 | 14 | 26 | 0.747 | 0.932 |
| MluLR15146 | 6 | 11 | 15 | 0.776 | 0.940 |
| MluLR4148 | 17 | 75 | 71 | 2.526 | 2.385 |
| MluLR18082 | 3 | 6 | 8 | 0.885 | 0.574 |
| MluLR18372 | 5 | 12 | 23 | 2.157 | 1.488 |
| MluLR3563 | 3 | 4 | 5 | 0.304 | 0.316 |
| MluLR14116 | 4 | 8 | 13 | 0.333 | 0.407 |
| MluLR18370 | 3 | 6 | 10 | 0.523 | 0.538 |
| MluLR9412 | 2 | 4 | 4 | 1.650 | 1.697 |