Table 4.
Differentially expressed genes related to the development and conidial formation of A. flavus
| Gene ID | Gene Name | RPKM | Log2(AM-Res/AM) | q value | DEGs | Annotated gene function | |
|---|---|---|---|---|---|---|---|
| AM | AM-Res | ||||||
| CADAFLAG00011929 | AFLA_101920 | 4.6010 | 1.5649 | −1.5559 | 1.249E-88 | Yes | Extracellular developmental signal biosynthesis protein FluG |
| CADAFLAG00007028 | AFLA_131490 | 76.2979 | 53.7967 | −0.5041 | Hypothetical protein | ||
| CADAFLAG00007282 | AFLA_134030 | 7.7607 | 3.5087 | −1.1452 | Developmental regulator FlbA development. | ||
| CADAFLAG00007610 | AFLA_137320 | 64.9838 | 16.8385 | −1.9483 | 2.173E-07 | Yes | C2H2 conidiation transcription factor FlbC |
| CADAFLAG00003623 | AFLA_017380 | 67.9510 | 41.5711 | −0.7089 | Hypothetical protein | ||
| CADAFLAG00011576 | AFLA_098380 | 0.4394 | 0.4080 | −0.1068 | Conidial hydrophobin RodA/RolA | ||
| CADAFLAG00003311 | AFLA_014260 | 0.0000 | 0.2077 | _ | Conidial hydrophobin RodB/HypB | ||
| CADAFLAG00003719 | AFLA_018340 | 74.9734 | 43.1293 | −0.7977 | G-protein complex alpha subunit GpaA/FadA | ||
| CADAFLAG00006026 | AFLA_046990 | 173.0674 | 78.9994 | −1.1314 | 1.435E-55 | Yes | APSES transcription factor StuA (stunted) |
| CADAFLAG00007519 | AFLA_136410 | 142.1301 | 101.1580 | −0.4906 | Transcriptional regulator Medusa(medusa) | ||
| CADAFLAG00001065 | AFLA_082850 | 0.9080 | 0.4216 | −1.1068 | C2H2 type conidiation transcription factor BrlA | ||
| CADAFLAG00002337 | AFLA_029620 | 1.5396 | 0.2376 | −2.6962 | Transcription factor AbaA | ||
| CADAFLAG00011194 | AFLA_052030 | 11.7189 | 5.8671 | −0.9981 | Regulatory protein wetA | ||
| CADAFLAG00006026 | AFLA_046990 | 173.0674 | 78.9994 | −1.1314 | Cell pattern formation-associated protein stuA | ||
| CADAFLAG00002704 | AFLA_033290 | 27.7370 | 19.7674 | −0.4887 | 7.824E-10 | Regulator of secondary metabolism LaeA | |
| CADAFLAG00008070 | AFLA_066460 | 16.3529 | 13.0959 | −0.3204 | 1.54E-32 | Developmental regulator AflYf / VeA | |
| CADAFLAG00000929 | AFLA_081490 | 33.9585 | 43.1005 | 0.3439 | Nucleoside diphosphatase Gda1/VelB | ||
| CADAFLAG00002131 | AFLA_027560 | 22.5485 | 37.5174 | 1.2854 | 1.77E-07 | Yes | Vacuolar protein sorting-associated protein 13 |
| CADAFLAG00003658 | AFLA_017730 | 24.5015 | 41.4414 | 1.3091 | 0.0002471 | Yes | Regulator of V-ATPase in vacuolar membrane protein 1 |
| CADAFLAG00005274 | AFLA_039470 | 27.8848 | 75.9818 | 1.9970 | 1.34E-11 | Yes | Vacuolar calcium ion transporter |
| CADAFLAG00006698 | AFLA_060890 | 137.9586 | 260.6940 | 1.4690 | 5.93E-15 | Yes | Vacuolar amino acid transporter 3 |
| CADAFLAG00010071 | AFLA_130130 | 166.9408 | 312.7826 | 1.4567 | 6.59E-09 | Yes | Putative vacuolar protein sorting-associated protein TDA6 |
| Novel00107 | Novel00107 | 32.5194 | 66.4116 | 1.5810 | 0.0032328 | Yes | Vacuolar protein sorting-associated protein 13 |
| CADAFLAG00011638 | AFLA_099000 | 317.3651 | 906.9007 | 2.0657 | 1.19E-49 | Yes | Superoxide dismutase [Cu-Zn] |
| CADAFLAG00010511 | AFLA_004450 | 5.3195 | 1.3098 | −1.4711 | 6.84E-09 | Yes | Nonribosomal peptide synthetase 12 |
RPKM: Reads per kilobase per million reads; q value: corrected p value; DEGs: differently expressed genes; AM-Res (Treatment) and AM (Control): A. flavus was cultured in A&M medium with or without resveratrol, respectively; log2(fold_change) = log2(AM-Res/AM); log2(fold_change) > 0: the expression of a gene was up-regulated; log2(fold_change) < 0: the expression of a gene was down-regulated