Table 3. MEMSAT-SVM topology analysis of palmitoyltransferases involved in palmitoylation of ARB, ER1(α) and PRB.
| Protein Topology | DHHC7 (Q9NXF8) |
DHHC21 (Q8IVQ6) |
||
|---|---|---|---|---|
| TM Helix | Kinks | TM Helix | Kinks | |
| Sequence | 1 - 308 | 1 - 308 | ||
| TM-1 | 41 - 70 (29) | 50 - 71 | 9 - 37 (28) | 19 - 35 |
| TM-2 | 78 - 102 (24) | 84 - 92 | 48 - 67 (19) | (pore-lining) |
| TM-3 | 173 - 301 (28) | 134 - 161 (27) | 149 - 163 | |
| TM-4 | 217 - 246 (29) | 224 - 232 | 179 - 203 (24) | 185 - 198 |
| Zinc Finger | 130 - 180 | 90 - 140 | ||
TM helix length is indicated in parentheses.