Table 2. Properties of Small Molecule Binding Sites in Av1 and Cp1 Xe-Pressurized Crystals.
distancea (Å) to | |||||||
---|---|---|---|---|---|---|---|
crystal | site | displaced species in native protein | B-factor (Å2) | occupancy (%) | peak heights in anomalous Fourier map (σ) | FeMo-cofactor | surface |
Av1-Xe (4WNA) | Xe1 | fills empty pocket | 27.30 | 77 | 18.51 | 11.2 | 10.9 |
28.16 | 81 | 20.23 | |||||
Xe2 | HOH | 31.29 | 49 | 8.48 | 15.1 | 0 | |
31.40 | 46 | 7.12 | |||||
Xe3 | imidazole | 31.48 | 62 | 9.62 | 33.1 | 0 | |
29.51 | 54 | 10.84 | |||||
Cp1-Xe (4WN9) | Xe1 | HOH | 41.89 | 28 | 5.20 | 28.1 | 0 |
39.52 | 34 | 5.78 | |||||
Xe2 | MPD | 64.15 | 46 | 5.93 | 23.8 | 0 | |
44.89 | 50 | 7.64 | |||||
Xe3 | HOH | 29.20 | 22 | 4.18 | 13.6 | 7.4 | |
33.79 | 19 | 5.53 | |||||
PRL | HOH | 20.65 | 100 | N/A | 24.5 | 7.7 | |
23.76 | 100 | N/A |
Distances were measured from Xe or PRL to the closest nonsolvent atom in the FeMo-cofactor and at the protein surface.