Table 6.
iHS score for HGDP continental (A) and Sub-Saharan (B) populations.
| A) | ||||||||
|---|---|---|---|---|---|---|---|---|
| SNP | North Africa |
Sub-Saharan Africa |
America | East Asia | Central- South Asia |
Middle East | Europe | Oceania |
| rs73885319 (G1) | 3.39 (0.21%) | |||||||
| rs60910145 (G1) | 3.46 (0.18%) | |||||||
| rs71785313 (G2) | 1.88 | |||||||
| rs136175 (G3) | 1.26 | −1.66 | −0.53 | −0.53 | −0.41 | 0.03 | 0.26 | −1.26 |
| rs136176 (G3) | 1.26 | −1.76 | −0.57 | −0.57 | −0.41 | 0.03 | 0.26 | −1.26 |
| B) | |||||||
|---|---|---|---|---|---|---|---|
| SNP | Biaka | Mbuti | Bantu | San | Yoruba | Mandenka | Bantu SA |
| rs73885319 (G1) | 4.34 (0.03%) | n/a | |||||
| rs60910145 (G1) | 4.34 (0.03%) | ||||||
| rs71785313 (G2) | 0.16 | −1.08 | 2.84 (0.83%) | 2.44 | |||
| rs136175 (G3) | 2.19 | −0.28 | −3.37 (0.37%) | n/a | n/a | ||
| rs136176 (G3) | −1.02 | 0.25 | n/a | ||||
iHS score were computed in each population where minor allele frequency of the core variant is >5%. For the top signals, we reported the corresponding top x% of the genome-wide |iHS| distribution (in average, top 1% of the distribution corresponded to |iHS|>2.7). n/a, not available; SA, South Africa.