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. 2014 Nov 26;1:14059. doi: 10.1038/hortres.2014.59

Table 1. List of the genes that are associated with epigenetic regulation during dormancy.

Subgroup P. trichocarpa v3.0 ID Description AGI Reference
DNA methylation Potri.001G009600.1 Chromomethylase 3 At1g69770 100
Potri.018G138000.1 Methyltransferase 1 At4g08990 100
Potri.004G134000.1 Methyltransferase 1 At4g13610 100
Potri.010G234400.1 HhH-GPD base excision DNA repair family protein At5g04580 101
Potri.006G116000.1 Demeter-like 1 At3g10010 101
Histone methylation Potri.004G075800.2 Polyamine oxidase 4 At1g65840 102
Potri.005G207300.1 Polyamine oxidase 2 At2g43020 102
Potri.005G207300.1 Polyamine oxidase 2 At2g43020 102
Potri.014G148700.1 Phytoene desaturase 3 At4g14210 102
Potri.005G050700.1 Zeta-carotene desaturase At3g04870 102
Potri.012G079500.1 Polyamine oxidase 1 At5g13700 102
Potri.015G074600.1 Polyamine oxidase 1 At5g13700 102
Potri.004G032700.1 transcription factor jumonji domain-containing protein At1g62310 102
Potri.015G080400.1 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein At5g63080 102
Potri.001G137700.1 Transcription factor jumonji family protein/zinc finger (C5HC2 type) family protein At5g46910 102
Potri.001G137700.1 Transcription factor jumonji family protein/zinc finger (C5HC2 type) family protein At5g46910 102
Potri.003G096100.1 Transcription factor jumonji family protein/zinc finger (C5HC2 type) family protein At5g46910 102
Potri.013G046700.1 Transcription factor jumonji family protein/zinc finger (C5HC2 type) family protein At1g08620 102
Potri.010G125200.1 Homocysteine S-methyltransferase family protein At3g25900  
Potri.010G083600.1 Homocysteine S-methyltransferase 3 At3g22740  
Histone acetylation Potri.013G068200.1 Histone acetyltransferase of the GNAT family 2 At5g56740 103
Potri.013G068200.1 Histone acetyltransferase of the GNAT family 2 At5g56740 103
Potri.015G090500.1 Radical SAM domain-containing protein/GCN5-related N-acetyltransferase (GNAT) family protein At5g50320 103
Potri.017G047600.1 HAC13 protein (HAC13) At3g19040 103
Potri.018G068200.1 Transducin family protein/WD-40 repeat family protein At1g55970 103
Potri.007G003400.1 Histone acetyltransferase of the CBP family 1 At1g55970 103
Potri.001G152100.1 Plant VAMP (vesicle-associated membrane protein) protein At1g55970 103
Potri.005G064200.1 Histone deacetylase 14 At4g33470 103
Potri.009G170700.1 Histone deacetylase 1 At4g38130 103
Potri.012G083800.1 Histone deacetylase 6 At5g63110 103, 104
Potri.015G082500.1 Histone deacetylase 6 At5g63110 103, 104
Potri.009G149400.1 Histone deacetylase 3 At3g44750 103
Potri.009G149400.1 Histone deacetylase 3 At3g44750 103
Potri.009G020500.1 Histone deacetylase 8 At1g08460 103
Potri.009G020500.1 Histone deacetylase 8 At1g08460 103
Chromatin remodeling Potri.007G026700.1 Chromatin remodeling 1 At5g66750  
Potri.019G129900.1 Chromatin remodeling 1 At5g66750 105
Potri.007G026700.1 Chromatin remodeling 1 At5g66750 105
Potri.019G044400.1 Like heterochromatin protein (LHP1) At5g17690 104
Potri.006G077600.1 Methyl-CPG-binding domain protein 02 At5g35330  
Potri.005G164100.2 Methyl-CPG-binding domain 8 At1g22310  
Potri.013G006000.1 ATP-dependent helicase family protein At1g08060 104
Potri.008G192100.1 ARM repeat superfamily protein At3g06400  
PcG (Polycomb Group) Potri.002G195800.1 TRICHOME BIREFRINGENCE-LIKE 6 At4g02020 104, 106
Potri.014G120100.1 SET domain-containing protein At4g02020 104, 106
Potri.002G216200.1 Transducin/WD40 repeat-like superfamily protein At5g58230 104, 106
Potri.009G135100.1 Transducin family protein/WD-40 repeat family protein At2g16780 104, 106
Potri.007G045300.1 DNA-directed DNA polymerases At5g67100 106
Potri.007G045300.1 DNA-directed DNA polymerases At5g67100 106
Potri.004G147000.1 AP2/B3-like transcriptional factor family protein At1g49480 106
Potri.009G108500.1 AP2/B3-like transcriptional factor family protein At3g18990 106
Potri.001G417300.1 Transducin/WD40 repeat-like superfamily protein At3g20740 104, 106