Skip to main content
. 2015 Sep 21;2015:834805. doi: 10.1155/2015/834805

Table 2.

Spearman's rank correlation between the genotype of rs2872507 (number of susceptibility alleles) and gene expression (dCt-values) in intestinal biopsy samples from different study groupsa.

Genesb NI_N_il NI_N_co IBD_N_il IBD_N_co IBD_I_co CD_N_il CD_N_co UC_N_il UC_N_co UC_I_co
n = 24 n = 33 n = 24 n = 29 n = 28 n = 11 n = 12 n = 12 n = 16 n = 19
P value P value P value P value P value P value P value P value P value P value
PGAP3 0.37 6.8 × 10−03 2.0 × 10−03 0.019 0.017 0.030 0.43 0.29 0.060 0.59
ERBB2 0.64 0.57 0.69 0.27 0.23 0.91 0.31 0.50 0.68 0.89
MIEN1 0.66 0.89 0.034 0.15 0.50 0.79 0.35 0.085 0.023 0.27
GRB7 0.93 0.71 0.21 0.61 0.99 0.51 0.93 0.31 0.93 0.50
IKZF3 0.88 0.85 0.69 0.43 0.47 0.42 0.39 0.80 0.92 0.27
ZPBP2 0.24 0.59 0.84 0.33 0.17 7.7 × 10−04 0.95 0.76 0.078 0.064
GSDMB 2.4 × 10−03 3.7 × 10−04 1.5 × 10−03 7.2 × 10−10 4.1 × 10−03 3.8 × 10−03 6.2 × 10−06 0.035 1.9 × 10−04 0.045
ORMDL3 0.92 0.77 0.037 0.35 0.47 0.016 0.63 0.24 0.045 0.22
LRRC3C 0.83 7.8 × 10−06 0.92 0.058 0.42 0.79 0.58 0.21 0.24 0.27
GSDMA 0.016 1.6 × 10−04 0.92 0.28 0.15 0.28 0.50 0.74 0.50 0.86
PSMD3 0.87 0.38 0.51 0.014 0.43 0.45 0.057 0.66 0.14 0.32
CSF3 0.42 0.45 0.61 0.66 0.81 0.77 0.31 0.25 0.17 0.10
MED24 0.39 0.43 0.16 6.9 × 10−03 0.61 0.50 0.085 0.76 0.093 0.21

aDisease status_Inflammatory status_sampling location; the disease statuses are Crohn's disease (CD), inflammatory bowel disease (IBD), non-IBD (NI), and ulcerative colitis (UC); the inflammatory statuses are inflamed (I) and noninflamed (N); the sampling locations are colon (co) and ileum (il).

bGenes have been arranged (top to bottom) in the order in which they are positioned along the chromosome, and the risk locus (rs2872507) is located between ZPBP2 and GSDMB (closer to ZPBP2).