Table 3.
SNP | HWEa | Effect | Frequency | Allele | Allelic OR | FDR | Power |
---|---|---|---|---|---|---|---|
alleleb | (case, ctrl) | p-value | % 95 CI | ||||
rs12129861 | 0.999 | A | 0.163 | 0.327 | 0.907 | 1 | 11.4 % |
0.393 | 0.177 | [0.747 ~ 1.101] | |||||
rs780094 | 0.999 | G | 0.394 | 1.64E−5 | 0.723 | 1.78E −4 | 87.6 % |
0.997 | 0.473 | [0.624 ~ 0.838] | |||||
rs734553 | 0.999 | C | 0.008 | 0.028 | 0.456 | 0.152 | 68.7 % |
0.997 | 0.018 | [0.223 ~ 0.935] | |||||
rs742132 | 0.999 | C | 0.227 | 0.538 | 1.056 | 1 | 7.1 % |
0.989 | 0.218 | [0.887 ~ 1.257] | |||||
rs1183201 | 0.999 | T | 0.153 | 6.39E−9 | 0.572 | 1.39E −7 | 99.8 % |
0.067 | 0.239 | [0.473 ~ 0.692] | |||||
rs12356193 | 0.999 | G | 0.002 | 0.659 | 1.43 | 1 | 7.2 % |
0.997 | 0.002 | [0.288 ~ 7.1] | |||||
rs17300741 | 0.999 | G | 0.063 | 0.133 | 1.27 | 0.581 | 19.2 % |
0.997 | 0.050 | [0.928 ~ 1.736] | |||||
rs505802 | 0.999 | A | 0.208 | 9.88E−4 | 0.747 | 0.007 | 72.2 % |
0.997 | 0.260 | [0.628 ~ 0.889] |
Results with p value less than 0.05 are shown in boldface
acalculated by FDR
bthe allele that the reported OR correlates with