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. 2015 Oct 5;10(10):e0139753. doi: 10.1371/journal.pone.0139753

Table 1. Pathogenic mutations found in 116 LS patients.

ID Gene Loss of IHC Alteration Consequence Exon Cancer (age) Inclusion criteria Reference
2–10 MSH2 - c.174dup p.Lys59Glnfs*23 1 CC/SC (45/48) BG 12
2–2 MSH2 - c.187del p.Val63fs*1 1 CC (21) AC-I 12
170 MSH2 MSH2/MSH6 c.528_529del p.Cys176* 03 SigC (61) BG Current study—Novel
154 MSH2 - c.942+3A>T - i5 EC/CC/SC AC-I Current study -Insight
047 MSH2 MSH2/MSH6 c.942+3 A>T - i5 CCsinc (51/51) AC-I 12
153 MSH2 MSH2/MSH6 c.1143_1144insA p.Arg382Thrfs*7 07 EC/CC (53/53) BG Current study—Novel
043 MSH2 MSH2/MSH6 c.1444A>T p.Arg482* 09 CC (53) AC-I 12
150 MSH2 - c.1444A>T p.Arg482* 09 RC (32) AC-I Current study—Insight
008 MSH2 MSH2/MSH6 c.1447G>T p.Glu483* 09 CCsin/RPC (27/44) AC-I 12
010 MSH2 MSH2/MSH6 c.1667delT p.Leu556* 11 CC (63) AC-I 12
042 MSH2 MSH2/MSH6 c.1967_1970dup p.Phe657Leufs*3 12 RC (15) BG 12
028 MSH2 - c.2131C>T p.Arg711* 13 CC (62) AC-I 12
165 MSH2 - c.2145del p. p.Asp716Thrfs*4 13 CC/EC/SC (28/33/43) AC-I Current study—Novel
020 MSH2 MSH2/MSH6 c.2152C>T p.Gln718* 13 CCsin/EC (47/49) AC-I 12
041 MSH2 MSH2/MSH6 c.2152C>T p.Gln718* 13 CCsin (36) AC-I 12
074 MSH2 MSH2/MSH6 c.2152C>T p.Gln718* 13 EC (49)/CC (52/55) AC-I 12
2–3 MSH2 - c.2152C>T p.Gln718* 13 CC/EC (41/52) AC-I 12
2–9 MSH2 - c.2152C>T p.Gln718* 13 CC (29) BG 12
017 MSH2 No Exon 5 amplification - 5 CC (68) AC-I Current study-Novel
006 MSH2 - c. 2525_2526delAG p.Glu842Valfs*3 15 CC (44) AC-I 12
036 MSH2 - EPCAM-MSH2 (exon1-4) deletion - 1–4 CCsin/EC/GC (44/45/50) AC-I Current study—Novel
173 MSH2 - Exon 6 deletion - 6 CC (42) Muir-Torre Current study—Insight
003 MSH2 - Exon 7 deletion - 7 CC (29) AC-I Current study—Insight
024 MSH2 MSH2/MSH6 Exon 8 deletion - 8 CCsin/SBC (43/51) AC-I Current study—Insight
072 MSH2 MSH2/MSH6 Exon 14 deletion - 14 CC (51) AC-I Current study—Novel
156 MLH1 - c.83C>T p.Pro28Leu 01 CC (46) AC-I Current study—Insight
001 MLH1 MLH1/PMS2 c.545+3 A>G - 06 CC/GC (40/42) AC-I 12
2–1 MLH1 - c.545+3A>G - 06 CC (58) AC-I 12
031 MLH1 PMS2 c.588+2T>A - 07 CC/HC (43/50) AC-I 12
021 MLH1 MLH1/PMS2 c.588+5G>C - 07 CC/EC (36/47) AC-I 12
2–8 MLH1 - c.677G>A p.Arg226Gln 08 RC/CC (31/44) BG 12
023 MLH1 MLH1/PMS2 c.779T>G p.Leu260Arg 09 CC (38) BG 12
033 MLH1 PMS2 c.791-6_793del - 10 CCsin (42) AC-I 12
2–6 MLH1 - c.1276C>T p.Gln426* 12 CC (65) BG 12
076 MLH1 - c.1459C>T p.Arg487* 13 CC (20) BG 12
103 MLH1 - c.1639_1643dup p.Leu549Tyrfs*44 14 OC/EC/CC (37/37/45) AC-I 12
058 MLH1 PMS2 c.1853delAinsTTCTT p.Lys618Ilefs*4 16 CC (40) AC-I 12
081 MLH1 PMS2 c.1975C>T p.Arg659* 17 CCsin (28) AC-I 12
099 MLH1 - c.2041G>A p.Ala681Thr 18 CC (47) AC-I 12
022 MLH1 No c.2224C>T p.Gln742* 19 CC (32) BG 12
152 MSH6 - c.1483C>T p.Arg495* 04 CC (59) BG Current study—Novel
050 MSH6 - c.2379_2380del p.Ala794Hisfs*9 04 EC/BC/PC (49/69/70) AC-II Current study—Novel
2–13 MSH6 - c.3487G>T p.Glu1163* 06 CC (39) BG Current study—Novel
032 MSH6 - c.3974_3976del p.Lys1325del 09 CC/LC (41/44) BG Current study—Novel
088 PMS2 - c.1239dup p.Asp414Argfs*45 11 CC (37) AC-I Current study—Novel

CC: Colon cancer; SC: Sebaceous carcinoma;SigC: Sigmoide adenocarcinoma; EC: Endometrial cancer; CCsin: Synchronic colon cancer; RC: Rectal cancer; RPC: Cancer of Renal Pelvis; SBC: Small Bowel cancer; GC: Gastric Cancer; HC: Hepatobiliary cancer; OC: Ovarian cancer, BC: Breast cancer; PC:Pancreatic cancer; LC: Lung cancer. AC-I: Amsterdam I; AC-II: Amsterdam II; BG: Bethesda guideline. The ref seq numbers for mutation description were: MLH1 (NM_000249), MSH2 (NM_000251.1), MSH6 (NM_000179.1), PMS1 (NM_000534.4) and PMS2 (NM_000535.5); -: Not available