Table 6. Prediction on known human lncRNA datasets.
| Human lincRNA of Cabili et al. (14281 processed/14353 total) | Human lncRNA of NONCODEv4 (90429 processed/92343 total) | Human lincRNA of NONCODEv4 (43730 processed/45644 total) | |
|---|---|---|---|
| lncRScan-SVM | 14069 (98.52%) | 77435 (85.63%) | 41984 (96.01%) |
| iSeeRNA | 13887 (97.24%) | 75535 (83.53%) | 41143 (94.08%) |
| iSeeRNA2 | 13848 (96.97%) | 73439 (81.21%) | 40821 (93.35%) |
| RNAcon | 12651 (88.59%) | 67873 (75.06%) | 35431 (81.02%) |
| CPAT | 13973 (97.84%) | 81651 (90.29%) | 41276 (94.39%) |
| CPC | 10910 (76.40%) | Not available a | 26380 (60.32%) |
The lncRNA prediction performance of lncRScan-SVM is compared with iSeeRNA, iSeeRNA2, RNAcon, CPAT and CPC on on three human lncRNA datasets. The biggest prediction ratio is highlighted by bold font.
a CPC was not available for predicting NONCODEv4 human lncRNAs and reported TOO_MANY_ILLEGAL_CHARACTERS after submitting through its web server.