Table 2. Results of squash fruit and seed transcriptome annotation based on homology.

Database	Number of BLAST hits
SWISS-PROT	22 934 (55%)
TrEMBL	33 116 (80%)
TAIR10	30 590 (74%)
GenBank NR	34 794 (84%)

All unigenes with an open reading frame were blasted against four databases and the number of unigenes with a significant hit are reported. Blast hits were filtered by e-value less than 1.0×10⁻²⁰.