Table 3. Minor allele frequency, information index, heterozygosity and inbreeding coefficient of the 25 SNP loci scored on 50 longan accessions.
SNP ID | Minor allele frequency | Information index | Observed heterozygosity | Expected heterozygosity | Inbreeding coefficient |
---|---|---|---|---|---|
Dl 475 | 0.396 | 0.671 | 0.375 | 0.478 | 0.216 |
Dl 477 | 0.410 | 0.677 | 0.100 | 0.484 | 0.793 |
Dl 479 | 0.357 | 0.652 | 0.714 | 0.459 | −0.556 |
Dl 480 | 0.344 | 0.644 | 0.200 | 0.452 | 0.557 |
Dl 483 | 0.420 | 0.680 | 0.840 | 0.487 | −0.724 |
Dl 486 | 0.290 | 0.602 | 0.340 | 0.412 | 0.174 |
Dl 488 | 0.418 | 0.680 | 0.388 | 0.487 | 0.203 |
Dl 489 | 0.194 | 0.492 | 0.102 | 0.313 | 0.674 |
Dl 494 | 0.216 | 0.522 | 0.250 | 0.339 | 0.262 |
Dl 496 | 0.458 | 0.690 | 0.875 | 0.497 | −0.762 |
Dl 499 | 0.220 | 0.527 | 0.400 | 0.343 | −0.166 |
Dl 503 | 0.061 | 0.230 | 0.122 | 0.115 | −0.065 |
Dl 504 | 0.220 | 0.527 | 0.400 | 0.343 | −0.166 |
Dl 505 | 0.438 | 0.685 | 0.875 | 0.492 | −0.778 |
Dl 507 | 0.380 | 0.664 | 0.240 | 0.471 | 0.491 |
Dl 508 | 0.420 | 0.680 | 0.680 | 0.487 | −0.396 |
Dl 509 | 0.316 | 0.624 | 0.633 | 0.433 | −0.463 |
Dl 511 | 0.410 | 0.677 | 0.260 | 0.484 | 0.463 |
Dl 515 | 0.330 | 0.634 | 0.620 | 0.442 | −0.402 |
Dl 517 | 0.120 | 0.367 | 0.240 | 0.211 | −0.136 |
Dl 518 | 0.250 | 0.562 | 0.500 | 0.375 | −0.333 |
Dl 520 | 0.280 | 0.593 | 0.560 | 0.403 | −0.389 |
Dl 544 | 0.120 | 0.367 | 0.240 | 0.211 | −0.136 |
Dl 554 | 0.410 | 0.677 | 0.100 | 0.484 | 0.793 |
Dl 556 | 0.190 | 0.486 | 0.100 | 0.308 | 0.675 |
Mean | 0.307 | 0.584 | 0.406 | 0.400 | −0.007 |