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. 2014 Mar 26;1:14016. doi: 10.1038/hortres.2014.16

Table 1. Grapevine WRKY genes identified in the PN40024.

Proposed name PN40024 12× V1 ID Chr ORF (aa) MW (kDa) pI Ai GRAVY Group Conserved motif Domain pattern Zinc finger
VvWRKY01 VIT_01s0011g00720 1 305 33.3585 5.62 47.67 −0.882 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY02 VIT_01s0026g01730 1 594 64.3392 6.02 57.24 −0.689 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY03 VIT_01s0010g03930 1 189 21.2588 9.13 54.13 −0.723 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY04 VIT_02s0025g00420 2 329 36.3666 5.71 60.52 −0.602 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY05 VIT_02s0025g01280 2 342 38.5618 6.05 55.03 −0.793 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY06 VIT_04s0008g01470 4 166 18.9167 5.2 48.19 −1.122 IIc WRKYGKK C–X4–C–X23–H–X–H C2H2
VvWRKY07 VIT_04s0008g05750 4 261 28.8756 9.1 65.4 −0.716 IIa WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY08 VIT_04s0008g05760 4 317 35.2637 8.22 73.19 −0.718 IIa WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY09 VIT_04s0008g06600 4 491 54.3129 8.88 57.8 −0.837 I 2×[WRKYGQK] C–X4–C–X23–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY10 VIT_04s0069g00920 4 338 36.5692 9.49 63.20 −0.501 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY11 VIT_04s0069g00970 4 156 17.4673 5.92 55.58 −0.75 IIc WRKYGKK C–X4–C–X23–H–X–H C2H2
VvWRKY12 VIT_04s0069g00980 4 101 12.0977 9.8 54.95 −1.067 IIc WRKYGKK C–X4–C–X23–H–X–H C2H2
VvWRKY13 VIT_04s0023g00470 4 502 54.8737 7.07 57.71 −0.806 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY14 VIT_05s0077g00730 5 309 34.4082 5.72 54.05 −0.825 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY15 VIT_06s0004g00230 6 129 14.989 8.89 67.36 −0.512 NG WKKYGQK C–X4–C–X23H–X–H C2H2
VvWRKY16 VIT_06s0004g07500 6 603 66.2845 6.42 47.06 −0.915 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY17 VIT_07s0141g00680 7 340 38.0411 9.84 64.24 −0.826 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY18 VIT_07s0005g01520 7 242 27.5485 5.86 50.7 −0.933 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY19 VIT_07s0005g01710 7 302 33.7616 6.74 54.9 −0.831 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY20 VIT_07s0005g02570 7 506 54.6601 8.03 58.32 −0.646 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY21 VIT_07s0031g00080 7 336 36.6164 9.57 63.54 −0.624 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY22 VIT_07s0031g01710 7 180 19.8731 6.3 54.17 −0.652 IIc WRKYGKK C–X4–C–X23–H–X–H C2H2
VvWRKY23 VIT_07s0031g01840 7 226 25.7181 9.08 65.18 −0.681 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY24 VIT_08s0058g00690 8 552 61.0009 7.29 44.71 −0.895 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY25 VIT_08s0058g01390 8 357 40.4237 5.73 62.55 −0.797 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY26 VIT_08s0040g03070 8 477 52.3037 8.84 52.91 52.91 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY27 VIT_08s0007g00570 8 299 33.1578 5.19 61.34 −0.752 NG WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY28 VIT_09s0018g00240 9 311 34.3754 8.71 65.85 −0.764 IIa WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY29 VIT_10s0116g01200 10 535 57.4599 6.04 64.67 −0.57 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY30 VIT_10s0003g01600 10 278 30.9392 5.14 42.81 −0.845 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY31 VIT_10s0003g02810 10 319 35.0008 6.76 50.78 −0.782 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY32 VIT_10s0003g05740 10 312 33.8314 7.56 51.67 −0.821 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY33 VIT_11s0037g00150 11 450 53.8146 6.12 55.91 −0.822 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY34 VIT_11s0052g00450 11 245 26.7143 9.91 68.49 −0.586 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY35 VIT_12s0028g00270 12 311 34.7884 6.92 42.67 −0.949 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY36 XP_002277383.1 12 244 26.3864 5.41 62.79 −0.517 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY37 VIT_12s0059g00880 12 593 64.1152 6.48 60.46 −0.665 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY38 VIT_12s0057g00550 12 403 44.3906 5.02 63.33 −0.917 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY39 VIT_12s0055g00340 12 487 53.6434 5.21 63.92 −0.823 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY40 VIT_13s0067g03130 13 364 40.288 5.97 55.8 −0.729 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY41 VIT_13s0067g03140 13 313 35.3091 5.45 60.1 −0.738 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY42 VIT_14s0081g00560 14 362 41.2639 9.68 64.59 −0.801 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY43 VIT_14s0068g01770 14 182 20.7873 9.41 52.42 −0.884 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY44 VIT_14s0108g00120 14 502 53.9169 6.48 64.36 −0.582 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY45 VIT_14s0108g01280 14 527 57.4979 8.12 59.41 −0.788 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY46 VIT_15s0021g01310 15 202 22.8743 9.13 49.16 −1 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY47 VIT_15s0046g01140 15 323 36.1682 5.14 58.24 −0.622 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY48 VIT_15s0046g02150 15 201 22.6178 9.28 72.29 −0.624 IIc WRKYGQK C–X4–C–X23–H–X–H C2H2
VvWRKY49 VIT_15s0046g02190 15 348 37.99 5.73 55.32 −0.633 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY50 VIT_16s0050g01480 16 182 20.5055 5.28 48.9 −1.057 IIe WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY51 VIT_16s0050g02510 16 364 40.0434 5.45 57.66 −0.704 III WRKYGQK C–X7–C–X23–H–X–H C2HC
VvWRKY52 VIT_17s0000g01280 17 151 17.7131 9.67 49.07 −1.043 IIc WRKYGQK C–X4–C-X23–H–X–H C2H2
VvWRKY53 VIT_17s0000g05810 17 605 65.1789 7.55 52.66 −0.746 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY54 VIT_18s0001g10030 18 319 34.7564 9.16 67.55 −0.502 IId WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY55 VIT_19s0090g00840 19 551 59.2499 9.24 57.75 −0.646 IIb WRKYGQK C–X5–C–X23–H–X–H C2H2
VvWRKY56 VIT_19s0090g01720 19 590 64.3486 6.27 65.88 −0.658 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY57 VIT_19s0015g01870 19 573 62.016 5.04 59.76 −0.709 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
VvWRKY58 VIT_01s0011g00220 RND 502 54.6082 7.66 51.53 −0.846 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)
VvWRKY59 VIT_00s0463g00010 UN 612 66.5023 6.1 65.15 −0.72 I 2×[WRKYGQK] C–X4–C–X22–H–X–H(N) C2H2
C–X4–C–X23–H–X–H(C)

Abbreviations: Ai, aliphatic index; Chr, chromosome numbers; GRAVY, grand average of hydropathicity; MW, molecular weight; NG, no chromosomal group identified; ORF, open reading frame; pI, isoelectric point; RDM, random chromosome; UN, unknown chromosome.

The variants of the conserved WRKYGQK peptide are shown in bold.