Table 1. Grapevine WRKY genes identified in the PN40024.
Proposed name | PN40024 12× V1 ID | Chr | ORF (aa) | MW (kDa) | pI | Ai | GRAVY | Group | Conserved motif | Domain pattern | Zinc finger |
---|---|---|---|---|---|---|---|---|---|---|---|
VvWRKY01 | VIT_01s0011g00720 | 1 | 305 | 33.3585 | 5.62 | 47.67 | −0.882 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY02 | VIT_01s0026g01730 | 1 | 594 | 64.3392 | 6.02 | 57.24 | −0.689 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY03 | VIT_01s0010g03930 | 1 | 189 | 21.2588 | 9.13 | 54.13 | −0.723 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY04 | VIT_02s0025g00420 | 2 | 329 | 36.3666 | 5.71 | 60.52 | −0.602 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY05 | VIT_02s0025g01280 | 2 | 342 | 38.5618 | 6.05 | 55.03 | −0.793 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY06 | VIT_04s0008g01470 | 4 | 166 | 18.9167 | 5.2 | 48.19 | −1.122 | IIc | WRKYGKK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY07 | VIT_04s0008g05750 | 4 | 261 | 28.8756 | 9.1 | 65.4 | −0.716 | IIa | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY08 | VIT_04s0008g05760 | 4 | 317 | 35.2637 | 8.22 | 73.19 | −0.718 | IIa | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY09 | VIT_04s0008g06600 | 4 | 491 | 54.3129 | 8.88 | 57.8 | −0.837 | I | 2×[WRKYGQK] | C–X4–C–X23–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY10 | VIT_04s0069g00920 | 4 | 338 | 36.5692 | 9.49 | 63.20 | −0.501 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY11 | VIT_04s0069g00970 | 4 | 156 | 17.4673 | 5.92 | 55.58 | −0.75 | IIc | WRKYGKK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY12 | VIT_04s0069g00980 | 4 | 101 | 12.0977 | 9.8 | 54.95 | −1.067 | IIc | WRKYGKK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY13 | VIT_04s0023g00470 | 4 | 502 | 54.8737 | 7.07 | 57.71 | −0.806 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY14 | VIT_05s0077g00730 | 5 | 309 | 34.4082 | 5.72 | 54.05 | −0.825 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY15 | VIT_06s0004g00230 | 6 | 129 | 14.989 | 8.89 | 67.36 | −0.512 | NG | WKKYGQK | C–X4–C–X23H–X–H | C2H2 |
VvWRKY16 | VIT_06s0004g07500 | 6 | 603 | 66.2845 | 6.42 | 47.06 | −0.915 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY17 | VIT_07s0141g00680 | 7 | 340 | 38.0411 | 9.84 | 64.24 | −0.826 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY18 | VIT_07s0005g01520 | 7 | 242 | 27.5485 | 5.86 | 50.7 | −0.933 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY19 | VIT_07s0005g01710 | 7 | 302 | 33.7616 | 6.74 | 54.9 | −0.831 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY20 | VIT_07s0005g02570 | 7 | 506 | 54.6601 | 8.03 | 58.32 | −0.646 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY21 | VIT_07s0031g00080 | 7 | 336 | 36.6164 | 9.57 | 63.54 | −0.624 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY22 | VIT_07s0031g01710 | 7 | 180 | 19.8731 | 6.3 | 54.17 | −0.652 | IIc | WRKYGKK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY23 | VIT_07s0031g01840 | 7 | 226 | 25.7181 | 9.08 | 65.18 | −0.681 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY24 | VIT_08s0058g00690 | 8 | 552 | 61.0009 | 7.29 | 44.71 | −0.895 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY25 | VIT_08s0058g01390 | 8 | 357 | 40.4237 | 5.73 | 62.55 | −0.797 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY26 | VIT_08s0040g03070 | 8 | 477 | 52.3037 | 8.84 | 52.91 | 52.91 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY27 | VIT_08s0007g00570 | 8 | 299 | 33.1578 | 5.19 | 61.34 | −0.752 | NG | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY28 | VIT_09s0018g00240 | 9 | 311 | 34.3754 | 8.71 | 65.85 | −0.764 | IIa | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY29 | VIT_10s0116g01200 | 10 | 535 | 57.4599 | 6.04 | 64.67 | −0.57 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY30 | VIT_10s0003g01600 | 10 | 278 | 30.9392 | 5.14 | 42.81 | −0.845 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY31 | VIT_10s0003g02810 | 10 | 319 | 35.0008 | 6.76 | 50.78 | −0.782 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY32 | VIT_10s0003g05740 | 10 | 312 | 33.8314 | 7.56 | 51.67 | −0.821 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY33 | VIT_11s0037g00150 | 11 | 450 | 53.8146 | 6.12 | 55.91 | −0.822 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY34 | VIT_11s0052g00450 | 11 | 245 | 26.7143 | 9.91 | 68.49 | −0.586 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY35 | VIT_12s0028g00270 | 12 | 311 | 34.7884 | 6.92 | 42.67 | −0.949 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY36 | XP_002277383.1 | 12 | 244 | 26.3864 | 5.41 | 62.79 | −0.517 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY37 | VIT_12s0059g00880 | 12 | 593 | 64.1152 | 6.48 | 60.46 | −0.665 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY38 | VIT_12s0057g00550 | 12 | 403 | 44.3906 | 5.02 | 63.33 | −0.917 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY39 | VIT_12s0055g00340 | 12 | 487 | 53.6434 | 5.21 | 63.92 | −0.823 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY40 | VIT_13s0067g03130 | 13 | 364 | 40.288 | 5.97 | 55.8 | −0.729 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY41 | VIT_13s0067g03140 | 13 | 313 | 35.3091 | 5.45 | 60.1 | −0.738 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY42 | VIT_14s0081g00560 | 14 | 362 | 41.2639 | 9.68 | 64.59 | −0.801 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY43 | VIT_14s0068g01770 | 14 | 182 | 20.7873 | 9.41 | 52.42 | −0.884 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY44 | VIT_14s0108g00120 | 14 | 502 | 53.9169 | 6.48 | 64.36 | −0.582 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY45 | VIT_14s0108g01280 | 14 | 527 | 57.4979 | 8.12 | 59.41 | −0.788 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY46 | VIT_15s0021g01310 | 15 | 202 | 22.8743 | 9.13 | 49.16 | −1 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY47 | VIT_15s0046g01140 | 15 | 323 | 36.1682 | 5.14 | 58.24 | −0.622 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY48 | VIT_15s0046g02150 | 15 | 201 | 22.6178 | 9.28 | 72.29 | −0.624 | IIc | WRKYGQK | C–X4–C–X23–H–X–H | C2H2 |
VvWRKY49 | VIT_15s0046g02190 | 15 | 348 | 37.99 | 5.73 | 55.32 | −0.633 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY50 | VIT_16s0050g01480 | 16 | 182 | 20.5055 | 5.28 | 48.9 | −1.057 | IIe | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY51 | VIT_16s0050g02510 | 16 | 364 | 40.0434 | 5.45 | 57.66 | −0.704 | III | WRKYGQK | C–X7–C–X23–H–X–H | C2HC |
VvWRKY52 | VIT_17s0000g01280 | 17 | 151 | 17.7131 | 9.67 | 49.07 | −1.043 | IIc | WRKYGQK | C–X4–C-X23–H–X–H | C2H2 |
VvWRKY53 | VIT_17s0000g05810 | 17 | 605 | 65.1789 | 7.55 | 52.66 | −0.746 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY54 | VIT_18s0001g10030 | 18 | 319 | 34.7564 | 9.16 | 67.55 | −0.502 | IId | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY55 | VIT_19s0090g00840 | 19 | 551 | 59.2499 | 9.24 | 57.75 | −0.646 | IIb | WRKYGQK | C–X5–C–X23–H–X–H | C2H2 |
VvWRKY56 | VIT_19s0090g01720 | 19 | 590 | 64.3486 | 6.27 | 65.88 | −0.658 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY57 | VIT_19s0015g01870 | 19 | 573 | 62.016 | 5.04 | 59.76 | −0.709 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
VvWRKY58 | VIT_01s0011g00220 | RND | 502 | 54.6082 | 7.66 | 51.53 | −0.846 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) | |||||||||||
VvWRKY59 | VIT_00s0463g00010 | UN | 612 | 66.5023 | 6.1 | 65.15 | −0.72 | I | 2×[WRKYGQK] | C–X4–C–X22–H–X–H(N) | C2H2 |
C–X4–C–X23–H–X–H(C) |
Abbreviations: Ai, aliphatic index; Chr, chromosome numbers; GRAVY, grand average of hydropathicity; MW, molecular weight; NG, no chromosomal group identified; ORF, open reading frame; pI, isoelectric point; RDM, random chromosome; UN, unknown chromosome.
The variants of the conserved WRKYGQK peptide are shown in bold.