Table 7. Candidate genes associated with disease resistance.

Gene IDa	Gene name	Protein name	Typeb/‘Indo’	Type/‘Su Shuai’
MDP0000272916	N	TMV resistance protein	Sc/NSd	S/NS/Sve
MDP0000495801			S/NS	S/NS/Sv
MDP0000749757			S/NS	S/NS/Sv
MDP0000743705			S/NS	S/NS/Sv
MDP0000233155	MbR7	TIR-NBS-LRR type R protein 7	S/NS	S/NS/Sv/Ff
MDP0000213823	RLP12	LRR receptor-like protein 12	S/NS	S/NS/Sv/F
MDP0000647479			S/NS	S/NS/Sv
MDP0000815929	At1g07650	Probable leucine-rich repeat (LRR) receptor-like serine/threonine-protein kinase	S/NS	S/NS/Sv/F
MDP0000233173			S/NS	S/NS/Sv
MDP0000232699			S/NS	S/NS/Sv
MDP0000262388	At3g47570	LRR receptor-like serine/threonine-protein kinase	S/NS	S/NS/Sv/F
MDP0000282367			S/NS	S/NS/Sv/F
MDP0000473154			S/NS	S/NS/Sv/F
MDP0000292097	At1g53440	Probable LRR receptor-like serine/threonine-protein kinase	S/NS	S/NS/Sv/F
MDP0000224930	At1g56140	Probable LRR receptor-like serine/threonine-protein kinase	S/NS	Sv/F
MDP0000165239	CLV1	LRR protein receptor protein kinase	S/NS	S/NS/Sv/F
MDP0000300234	SOBIR1	LRR receptor-like serine/threonine/tyrosine-protein kinase	S/NS	S/NS/Sv/F

^aGene ID, gene locus corresponds to gene ID in apple genome.

^bType of mutation in genotypes.

^cThere are single nucleotide polymorphism in genes.

^dThere are non-synonymous mutations in genes.

^eThere are structural variants in genes.

^fThere are frameshift mutations in genes.