Table 3. Defense-related GO terms.

		All DEG		Upregulated DEG
GO_acc	Term	DEG num.	FDR	DEG num.	FDR
Defense response
GO:0006952	Defense response	689	1.20×10−71	302	4.80×10−50
GO:0009814	Defense response, incompatible interaction	287	5.60×10−56	123	2.40×10−30
GO:0006955	Immune response	423	2.30×10−49	174	1.70×10−28
GO:0050776	Regulation of immune response	158	9.60×10−13	69	2.60×10−10
GO:0009607	Response to biotic stimulus	658	1.80×10−52	274	2.20×10−35
GO:0009595	Detection of biotic stimulus	61	2.50×10−14	25	9.70×10−7
GO:0002831	Regulation of response to biotic stimulus	56	5.00×10−12	22	2.80×10−5
GO:0009620	Response to fungus	211	8.10×10−24	94	2.10×10−17
GO:0050832	Defense response to fungus	153	2.50×10−20	67	2.30×10−13
Plant–pathogen interaction
GO:0007166	Cell surface receptor-linked signaling pathway	64	2.40×10−6	20	0.1
GO:0000165	MAPKKK cascade	102	3.10×10−16	42	1.10×10−8
GO:0019722	Calcium-mediated signaling	10	1	5	1
GO:0046686	Response to cadmium ion	159	1.20×10−8	52	0.0068
GO:0009626	Plant-type hypersensitive response	177	6.30×10−22	85	1.00×10−18
GO:0010363	Regulation of plant-type hypersensitive response	145	9.60×10−13	68	6.80×10−12
GO:0009626	Plant-type hypersensitive response	177	6.30×10−22	85	1.00×10−18
GO:0012501	Programmed cell death	185	5.50×10−19	87	1.30×10−16
GO:0043067	Regulation of programmed cell death	148	3.40×10−11	69	5.60×10−11
Small-molecule hormones
GO:0009867	Jasmonic acid mediated signaling pathway	126	2.70×10−16	51	6.90×10−9
GO:0009862	Systemic acquired resistance, salicylic acid-mediated signaling pathway	116	3.40×10−16	45	9.80×10−8
GO:0009863	Salicylic acid mediated signaling pathway	143	1.90×10−14	58	1.40×10−8
GO:0010476	Gibberellin-mediated signaling pathway	29	0.028	8	1.00×100
GO:0009738	Abscisic acid-mediated signaling pathway	74	0.031	34	0.0024
GO:0009736	Cytokinin-mediated signaling pathway	20	1	6	1.00×100
GO:0009734	Auxin-mediated signaling pathway	14	1	5	1.00×100
GO:0009742	Brassinosteroid-mediated signaling pathway	9	1	0	1.00×100
GO:0009873	Ethylene-mediated signaling pathway	31	1	15	0.33
GO:0009753	Response to jasmonic acid stimulus	203	1.60×10−3	97	2.30×10−20
GO:0009751	Response to salicylic acid stimulus	191	4.80×10−19	82	3.40×10−13
GO:0009737	Response to abscisic acid stimulus	179	9.60×10−5	92	6.60×10−11
GO:0009733	Response to auxin stimulus	127	0.00071	55	0.0001
GO:0009739	Response to gibberellin stimulus	56	0.002	19	0.22
GO:0009723	Response to ethylene stimulus	100	0.021	42	0.0058
GO:0009735	Response to cytokinin stimulus	28	1	10	1
GO:0009741	Response to brassinosteroid stimulus	29	1	7	1
GO:0009697	Salicylic acid biosynthetic process	129	4.10×10−33	65	1.70×10−23
GO:0009695	Jasmonic acid biosynthetic process	74	2.00×10−15	33	4.20×10−9
GO:0016132	Brassinosteroid biosynthetic process	46	0.00015	8	1
GO:0009851	Auxin biosynthetic process	47	0.00037	16	0.15
GO:0009686	Gibberellin biosynthetic process	17	0.68	5	1
GO:0009688	Abscisic acid biosynthetic process	10	1	0	1
GO:0009691	Cytokinin biosynthetic process	9	1	0	1
GO:0009693	Ethylene biosynthetic process	30	1	10	1
GO:0009696	Salicylic acid metabolic process	134	5.70×10−33	68	4.00×10−24
GO:0009694	Jasmonic acid metabolic process	76	8.80×10−12	35	2.10×10−8
GO:0009850	Auxin metabolic process	55	3.30×10−5	18	0.11
GO:0016131	Brassinosteroid metabolic process	49	4.30×10−5	10	1
GO:0009685	Gibberellin metabolic process	20	0.35	5	1
GO:0009690	Cytokinin metabolic process	14	1.00×100	0	1
GO:0009692	Ethylene metabolic process	30	1.00×100	10	1
GO:0009687	Abscisic acid metabolic process	12	1.00×100	5	1
Secondary metabolites
GO:0019748	Secondary metabolic process	493	3.40×10−43	206	1.10×10−28
GO:0009698	Phenylpropanoid metabolic process	200	4.60×10−34	106	6.70×10−32
GO:0006720	Isoprenoid metabolic process	225	6.70×10−29	66	6.70×10−6
GO:0009812	Flavonoid metabolic process	126	4.60×10−22	69	5.00×10−22
GO:0009808	Lignin metabolic process	50	1.70×10−17	26	1.20×10−11
GO:0046283	Anthocyanin metabolic process	47	7.00×10−10	26	2.70×10−9
GO:0052541	Plant-type cell wall cellulose metabolic process	16	5.90×10−5	0	1.00×100
GO:0052546	Cell wall pectin metabolic process	17	0.0017	19	0.18