Table 3. Significantly enriched GO terms in 38 modules.

Module	GO term description	GO term	p value
1	Protein catabolic process	13/30	2.1×10−5
2	Ribonucleoprotein complex biogenesis	152/207	3.0×10−90
3	Photosynthesis	54/69	1.0×10−40
4	Cellular amine metabolic process	18/82	2.6×10−2
5	Response to salicylic acid stimulus	5/8	2.1×10−4
7	Carbohydrate metabolic process	18/102	2.4×10−5
11	DNA metabolic process	21/40	5.7×10−19
12	ATP synthesis coupled electron transport	9/16	1.5×10−8
15	Cellular biosynthetic process	34/408	4.4×10−7
17	Response to heat	11/31	3.5×10−10
20	Plant-type cell wall biogenesis	6/7	1.5×10−9
24	Response to auxin stimulus	3/10	2.8×10−2
25	Phenylpropanoid biosynthetic process	9/28	6.7×10−11
26	ATP metabolic process	5/14	1.6×10−5
29	Protein folding	6/57	1.0×10−5
30	Lipid transport	3/14	2.1×10−2
31	Flavonoid biosynthetic process	6/8	6.2×10−11
34	Response to wounding	3/10	3.5×10−5
35	Carboxylic acid metabolic process	6/141	3.4×10−4
36	Response to biotic stimulus	5/37	6.1×10−6
37	Protein ubiquitination	2/14	5.9×10−3
38	Acyl-carrier-protein biosynthetic process	4/25	1.1×10−4
42	Metal ion transport	3/18	9.9×10−5
48	Modification-dependent protein catabolic process	4/24	2.1×10−6
51	Nucleic acid metabolic process	4/96	2.5×10−3
57	Cell redox homeostasis	3/15	1.3×10−4
75	Fatty acid biosynthetic process	3/21	8.9×10−5
79	Water homeostasis	1/1	2.1×10−2
83	One-carbon metabolic process	3/9	7.9×10−6
87	Xylulose metabolic process	1/1	3.6×10−2
96	Regulation of cell cycle	2/6	1.6×10−3
101	Nucleosome assembly	2/25	4.6×10−2
105	D-xylose metabolic process	3/3	9.1×10−8
107	Oligosaccharide metabolic process	2/29	3.4×10−2
112	Ketone biosynthetic process	3/13	3.1×10−5
115	Chitin catabolic process	3/9	5.1×10−6
124	Lipid transport	3/14	1.8×10−5
139	Response to chlorate	3/3	5.5×10−8

A GO term indicates numerical values of the same GO term in one module and the grapevine gene co-expression network.