Table 1.
Potential novel genes identified in other organisms by Tiling Assembly
Species | Ch | GS (Mb) | No. of genes | No. of novel genes | % Annot. genes |
---|---|---|---|---|---|
O. sativa | 12 | 381 | 55,986 | 767 | 1.37 |
A. thaliana | 5 | 125 | 25,498 | 218 | 0.85 |
S. cerevisiae | 16 | 12 | 6,603 | 458 | 6.94 |
C. elegans | 6 | 97 | 47,060 | 126 | 0.27 |
D. melanogaster | 4 | 120 | 17,294 | 361 | 2.09 |
RNA-seq data downloaded from the SRA were used to investigate the ability of Tiling Assembly to find unannotated genes in additional model organisms. For each of the organisms, the same criteria were used for identifying potential novel genes as those used for rice.
Ch: number of chromosomes; GS: genome size; Annot. genes: annotated genes.