Table 1.
Comparison between porcine and other reduced representation (RR) genomes
| Genome |
MspI |
|||
|---|---|---|---|---|
| Human | Mouse | Zebrafish59 | Pig | |
| Size of genome (Gb) | 3.2 | 2.8 | 1.41 | 2.8 |
| Size of RR genome (Mb) | 74 | 38 | 31 | 73 |
| Per cent of whole genome | 2.3 | 1.4 | 2.2 | 2.6 |
| GC content of whole genome (%) | 40.9 | 41.7 | 36.5 | 42.3 |
| Number of fragments (RR genome) | 647,626 | 333,104 | 264,598 | 664,080 |
| Number of CpG sites (RR genome) | 4,068,947 | 1,506,712 | 1,430,390 | 5,586,410 |
| Per cent of total genomic CpG sites | 13.5 | 7 | 5.3 | 18.30 |
All RR genomes were simulated by selecting DNA fragment in a 40- to 220-bp window after in silico restriction enzyme digestion.