Table 3. Differential exon usage.

DEXSeq found evidence of differential exon usage in our anti-CD3/CD28 stimulated samples at 4 genes that have been genetically associated with Coeliac disease.

Chromosome	Exon start	Exon end	Symbol	pvalue	padj	Exon #	log2foldchange
2	182322131	182322154	ITGA4	1.91E-04	0.045	E005	-2.465
12	111843752	111844081	SH2B3	1.08E-03	0.086	E001	-2.869
12	111855923	111856681	SH2B3	8.16E-05	0.034	E003	-1.398
2	181845333	181845533	UBE2E3	2.59E-04	0.050	E008	-1.729
22	21983299	21983476	YDJC	2.19E-04	0.047	E005	-1.196
22	21983597	21983696	YDJC	2.26E-07	0.003	E007	-0.403