Table 1.

Number of Genes Tested and asQTLs Discovered at FDR = 1% in Each Population and by Each Method

Population	Number of Genes: Altrans	asQTLs Altrans	Number of Genes: Cufflinks	asQTLs Cufflinks	Overlap	Overlap p Value
EUR	7,443	1,427	7,148	1,737	780	1.3 × 10−4
YRI	7,720	166	7,391	304	76	1.2 × 10−4

The overlap column lists the common genes between the methods and the p value refers to this overlap arising by chance.