Table I. Summary of AI-NETD experiments with five different high-pH solvent systems.
Solvent system | 5 mm ammonium formate pH 10 | 5 mm ammonium formate pH 11.5 | 10 mm piperidine pH ∼ 11.5 | 5 mm piperidine +5% DMSO, pH ∼ 11.3 | 5 mm piperidine pH ∼ 11.3 |
---|---|---|---|---|---|
Total MS/MS scans | 30,818 | 32,752 | 38,856 | 40,865 | 39,318 |
Total peptide spectral matches (PSMs) | 10,123 | 10,371 | 15,492 | 16,606 | 20,099 |
Total unique peptides | 3,659 | 3,924 | 5,920 | 5,208 | 7,601 |