Table 3. Proteins extracted from the byssus distal regions of P. fucata revealed by proteomic analysis.
| Protein name | Protein ID in the genome | Protein homology | Domain |
|---|---|---|---|
| TSP1 | pfu_aug1.0_532.1_65503.t1 | Thrombospondin type 1 repeat containing protein [Phytophthora cinnamomi] | TSP1+vWFA |
| P-UF1 | pfu_aug1.0_8925.1_31680.t1 | Hypothetical protein LOTGIDRAFT_160181 [Lottia gigantea] | vWFA |
| P-UF2 | pfu_aug1.0_7578.1_60273.t1 | / | Coiled-coil |
| Actin | pfu_aug1.0_3120.1_51891.t1 | Actin, cytoplasmic [Crassostrea gigas] | Actin |
| Myosin | pfu_aug1.0_13207.1_46613.t1 | Myosin heavy chain, striated muscle [Crassostrea gigas] | Myosin head |
| Tubulin | pfu_aug1.0_158415.1_21306.t1 | Beta tubulin, partial [Yoldia scissurata] | Beta_tubulin |
| Peroxidase | pfu_aug1.0_33687.1_48123.t1 | Peroxidase-like protein; [Pinctada margaritifera] | An_peroxidase |
| Peroxidase2 | pfu_aug1.0_385.1_65383.t1 | Peroxidase-like protein; [Pinctada margaritifera] | An_peroxidase |
| Copper/zinc superoxide dismutase | pfu_aug1.0_2300.1_44326.t1 | Superoxide dismutase [Cu-Zn] [Crassostrea gigas] | Sod_Cu |
| Proteinase inhibitors | pfu_aug1.0_69367.1_13096.t1 | Hypothetical protein CGI_10023765 [Crassostrea gigas] | Thiol-ester_cl |
| WR1 | pfu_aug1.0_1268.1_58418.t1 | Hypothetical protein CGI_10019179 [Crassostrea gigas] | Worm-specific repeat type 1 |
| ATPase | pfu_aug1.0_4962.1_67111.t1 | Mitochondrial H+ ATPase a subunit [Pinctada fucata] | ATP-synt_ab |
| ATP synthase subunit beta | pfu_aug1.0_193784.1_28591.t1 | Mitochondrial ATP synthase subunit beta [Malleus albus] | ATP-synt_ab |
| Calcium-transporting ATPase | pfu_aug1.0_1160.1_36844.t1 | Sarco/endoplasmic reticulum calcium ATPase isoform A [Pinctada fucata] | E1-E2_ATPase |
Notes: The protein ID is the gene ID in the draft genome of Pinctada fucata, which is available at http://marinegenomics.oist.jp/genomes/viewer?project_id=20¤t_assembly_version=ver1.0.