Table 1.
Genes | Exon | Primer name | Sequence (5′-3′) | Amplicon size (bp) | Ta (°C) |
---|---|---|---|---|---|
Primers for Assessment of DNA Quality by Conventional Multiplex PCR | |||||
RAG1 | E2 | Forward | 5′-TGTTGACTCGATCCACCCCA-3′ | 200 | 60 |
Reverse | 5′-TGAGCTGCAAGTTTGGCTGAA-3′ | ||||
PLZF | E1 | Forward | 5′-TGCGATGTGGTCATCATGGTG-3′ | 300 | 60 |
Reverse | 5′-CGTGTCATTGTCGTCTGAGGC-3′ | ||||
AF4 | E11 | Forward | 5′-CCGCAGCAAGCAACGAACC-3′ | 400 | 60 |
Reverse | 5′-GCTTTCCTCTGGCGGCTCC-3′ | ||||
AF4 | E3 | Forward | 5′-GGAGCAGCATTCCATCCAGC-3′ | 600 | 60 |
Reverse | 5′-CATCCATGGGCCGGACATAA-3′ | ||||
Primers for Investigation of Mutations in Oncogenes and Tumor Suppressor Genes Involved in DLBCL by PCR and Sanger Sequencing | |||||
CARD11 | E5-1 | Forward | 5′-GTGCCCCCTCTCCACAGT-3′ | 200 | 62 |
Reverse | 5′-AGTACCGCTCCTGGAAGGTT-3′ | ||||
E5-2 | Forward | 5′-GAAGAAGCAGATGACGCTGA-3′ | 235 | 62 | |
Reverse | 5′-GTCACCCTGGCGGAGTAG-3′ | ||||
E6 | Forward | 5′-CACCCTTGGGGTATTTCAGA-3′ | 210 | 59 | |
Reverse | 5′-CAGGCCCTCACCTGGATG-3′ | ||||
E7 | Forward | 5′-CCTGACCCTCTGAAACCTCCT-3′ | 204 | 62 | |
Reverse | 5′-GCGATCCCCACTCCCAC-3′ | ||||
E8 | Forward | 5′-TCGATGCGCATATTGATTTC-3′ | 181 | 62 | |
Reverse | 5′-CTGCAGGTGGTGCCTGTA-3′ | ||||
E9 | Forward | 5′-CCCAAAGCAGCCTTCGTC-3′ | 234 | 62 | |
Reverse | 5′-cCTGGTCCAGGTTGTTGCTGTCC-3′ | ||||
MYD88 | E1-1 | Forward | 5′-CTCGGGGCTCCAGATTGTA-3′ | 327 | 58 |
Reverse | 5′-GCCGGATCTCCAAGTACTCA-3′ | ||||
E1-2 | Forward | 5′-GCTGCTCTCAACATGCGAGT-3′ | 317 | 62 | |
Reverse | 5′-GGAAAGTCAGCCTCCTCACC-3′ | ||||
E2 | Forward | 5′-CTGGATCCTGACTGTGGGTAA-3′ | 281 | 62 | |
Reverse | 5′-GCTTCAAACACCCATGCTCT-3′ | ||||
E3 | Forward | 5′-TCTGACCACCACCCTTGTG-3′ | 264 | 62 | |
Reverse | 5′-CAGGGCAGGGCTTCATGC-3′ | ||||
E4 | Forward | 5′-GGCCCTTCCTGAAGCTATTC-3′ | 270 | 62 | |
Reverse | 5′-TGGTACTGCATCCACAGTCC-3′ | ||||
E5 | Forward | 5′-GTTGAAGACTGGGCTTGTCC-3′ | 292 | 59 | |
Reverse | 5′-AGGAGGCAGGGCAGAAGTA-3′ | ||||
CD79A | E5 | Forward | 5′-ATGAAGTGAGTGAAGGGTGGG-3′ | 326 | 58 |
Reverse | 5′-AGAATGTCCCAGGGAAGTGAG-3′ | ||||
CD79B | E5 | Forward | 5′-TAGGTGGCTGTCTGGTCAATG-3′ | 306 | 58 |
Reverse | 5′-TGTTCTTGCAGAATGCACCTC-3′ | ||||
E6 | Forward | 5′-CTGGAGACAAATGGCAGCTC-3′ | 362 | 58 | |
Reverse | 5′-CACCTACGAGGTAAGGAGAGGG-3′ | ||||
PRDM1 | E1 | Forward | 5′-GGAGAATGTGGACTGGGTAG-3′ | 220 | 55 |
Reverse | 5′-TAAGTGCACTAAAGCAGAAGC-3′ | ||||
E2-1 | Forward | 5′-TGTATTAGTCATAGCCTCTCA-3′ | 367 | 55 | |
Reverse | 5′-CTCTTCAAACTCAGCCTCTGT-3′ | ||||
E2-2 | Forward | 5′-TGTGAGGTTTCAGGGATTGGCAGA-3′ | 261 | 55 | |
Reverse | 5′-AGGTCCCCAATCTTCTTGTC-3′ | ||||
E3 | Forward | 5′-TTGTATTACTACTTGACAGTCC-3′ | 258 | 55 | |
Reverse | 5′-TTCCTAACATTTAATGGGTCTG-3′ | ||||
E4-1 | Forward | 5′-GTTTATTCTGAGAGGTGCTGG-3′ | 253 | 55 | |
Reverse | 5′-CAAGAAGTTCCTGGTTGGCA-3′ | ||||
E4-2 | Forward | 5′-ATGTGAATCCAGCACACTCTC-3′ | 289 | 55 | |
Reverse | 5′-TCCAACACATGACAAAGCCGT-3′ | ||||
E5-1 | Forward | 5′-TTGCTTCAGTTCTCTCTAGCC-3′ | 243 | 55 | |
Reverse | 5′-TTCTAAAGTCATCGAGGTCC-3′ | ||||
E5-2 | Forward | 5′-TCCTAAAATTGGACTCCAACC-3′ | 294 | 55 | |
Reverse | 5′-TGGAGCTCTTGAGGCTTTGGT-3′ | ||||
E5-3 | Forward | 5′-AGACTTTTTGAAAGCTTCC-3′ | 300 | 55 | |
Reverse | 5′-TTGTACGAGGGGATGAAAGCTG-3′ | ||||
E5-4 | Forward | 5′-TACGCTTACTTGAACGCGTC-3′ | 278 | 55 | |
Reverse | 5′-AGAGAAGTGGGGTTGAGCAT-3′ | ||||
E5-5 | Forward | 5′-ATCAACAACTTTGGCCTCTTC-3′ | 296 | 55 | |
Reverse | 5′-TTGGGCTGCACCACATGTTCT-3′ | ||||
E5-6 | Forward | 5′-ATGAAGGACAAGGCCTGTAG-3′ | 314 | 55 | |
Reverse | 5′-CAAACACAAGCATGCACTCAC-3′ | ||||
E6 | Forward | 5′-AACACTTGAGTCTTGGAGCAG-3′ | 267 | 55 | |
Reverse | 5′-GTGACTCACAGACATTTTCTA-3′ | ||||
E7-1 | Forward | 5′-TTGGCAACTCTTAATCTTCTGG-3′ | 284 | 55 | |
Reverse | 5′-TCAGGTGAACCTTGAGGCTACAG-3′ | ||||
E7-2 | Forward | 5′-CCAAGTTCACCCAGTTTGTG-3′ | 297 | 55 | |
Reverse | 5′-TTCTGACCACGGCCAGAATTTC-3′ | ||||
E7-3 | Forward | 5′-TGACATCAGTGACAATGCTGAC-3′ | 313 | 55 | |
Reverse | 5′-ACTCACCAAGTCATAACTTA-3′ | ||||
TP53 | E5 | Forward | 5′-CACTTGTGCCCTGACTTTCA-3′ | 267 | 64 |
Reverse | 5′-AACCAGCCCTGTCGTCTCT-3′ | ||||
E6 | Forward | 5′-GAGAGACGACAGGGCTGGT-3′ | 231 | 62 | |
Reverse | 5′-CACTGACAACCACCCTTAACC-3′ | ||||
E7 | Forward | 5′-CCTGCTTGCCACAGGTCT-3′ | 295 | 62 | |
Reverse | 5′-GTGATGAGAGGTGGATGGGTAG-3′ | ||||
E8 | Forward | 5′-GGACAGGTAGGACCTGATTTCC-3′ | 257 | 64 | |
Reverse | 5′-TGAATCTGAGGCATAACTGCAC-3′ | ||||
E9 | Forward | 5′-GACCAAGGGTGCAGTTATGC-3′ | 277 | 62 | |
Reverse | 5′-ACCAGGAGCCATTGTCTTTG-3′ | ||||
E10 | Forward | 5′-AACTTGAACCATCTTTTAACTCAGG-3′ | 242 | 62 | |
Reverse | 5′-GAATCCTATGGCTTTCCAACCT-3′ | ||||
TNFAIP3 | E2a | Forward | 5′-CTGCAGGCAGCTATAGAGGAG-3′ | 272 | 58 |
Reverse | 5′-CGAAACTGAGGACAAAACTGG-3′ | ||||
E2b | Forward | 5′-GCAATATGCGGAAAGCTGTG-3′ | 300 | 58 | |
Reverse | 5′-GCTATCACCCAGGCAAAAGA-3′ | ||||
E3 | Forward | 5′-TTGCTGGGTCTTACATGCAG-3′ | 378 | 58 | |
Reverse | 5′-GCTTCGCTTAGCCAAATTCA-3′ | ||||
E4 | Forward | 5′-GGGAGTACAGGATACATTCAAGC-3′ | 251 | 58 | |
Reverse | 5′-AAGGCATAAGGCTGAAAGCA-3′ | ||||
E5 | Forward | 5′-ACCTAAGGGCCTCATTTTCC-3′ | 275 | 58 | |
Reverse | 5′-GCAAAAAGGAAAACCCTGATG-3′ | ||||
E6 | Forward | 5′-TGAGATCTACTTACCTATGGCCTTG-3′ | 315 | 58 | |
Reverse | 5′-TCAGGTGGCTGAGGTTAAAGA-3′ | ||||
E7a | Forward | 5′-ACAGGCCTGCATTTCAGTG-3′ | 282 | 58 | |
Reverse | 5′-GGAAGGTTCCATGGGATTC-3′ | ||||
E7b | Forward | 5′-GCAGGAAAACAGCGAGCA-3′ | 272 | 58 | |
Reverse | 5′-CCAAGGGCTCATAGGCTTCT-3′ | ||||
E7c | Forward | 5′-ACTCCCAAAGCTGAACTCCA-3′ | 304 | 58 | |
Reverse | 5′-GGGATCCAAGTGCCTTGT-3′ | ||||
E7d | Forward | 5′-ACTGCCATGAAGTGCAGGAG-3′ | 279 | 58 | |
Reverse | 5′-ATCTGACTTGGAACGCTGGT-3′ | ||||
E7e | Forward | 5′-TGCAGTACTTGCTTCAAAAGGA-3′ | 313 | 58 | |
Reverse | 5′-CCACTTCACTCACGTTTGTTTT-3′ | ||||
E8 | Forward | 5′-GGGGTGACCCCTATGTGGTACT-3′ | 293 | 58 | |
Reverse | 5′-CCAGTTGCTCTTCTGTCCTTTT-3′ | ||||
E9a | Forward | 5′-GTGCTCTCCCTAAGAAATGTGAG-3′ | 205 | 58 | |
Reverse | 5′-CTGGTTGGGATGCTGACACT-3′ | ||||
E9b | Forward | 5′-CTCTGCATGGAGTGTCAGCAT-3′ | 257 | 58 | |
Reverse | 5′-GGGTTCAGAGGATAGCACCA-3′ |
DLBCL, diffuse large B-cell lymphoma; E, exon.