Skip to main content
. 2015 Sep;17(5):521–532. doi: 10.1016/j.jmoldx.2015.04.008

Table 1.

Primers Used for Conventional PCR and Sanger Sequencing

Genes Exon Primer name Sequence (5′-3′) Amplicon size (bp) Ta (°C)
Primers for Assessment of DNA Quality by Conventional Multiplex PCR
 RAG1 E2 Forward 5′-TGTTGACTCGATCCACCCCA-3′ 200 60
Reverse 5′-TGAGCTGCAAGTTTGGCTGAA-3′
 PLZF E1 Forward 5′-TGCGATGTGGTCATCATGGTG-3′ 300 60
Reverse 5′-CGTGTCATTGTCGTCTGAGGC-3′
 AF4 E11 Forward 5′-CCGCAGCAAGCAACGAACC-3′ 400 60
Reverse 5′-GCTTTCCTCTGGCGGCTCC-3′
 AF4 E3 Forward 5′-GGAGCAGCATTCCATCCAGC-3′ 600 60
Reverse 5′-CATCCATGGGCCGGACATAA-3′
Primers for Investigation of Mutations in Oncogenes and Tumor Suppressor Genes Involved in DLBCL by PCR and Sanger Sequencing
 CARD11 E5-1 Forward 5′-GTGCCCCCTCTCCACAGT-3′ 200 62
Reverse 5′-AGTACCGCTCCTGGAAGGTT-3′
E5-2 Forward 5′-GAAGAAGCAGATGACGCTGA-3′ 235 62
Reverse 5′-GTCACCCTGGCGGAGTAG-3′
E6 Forward 5′-CACCCTTGGGGTATTTCAGA-3′ 210 59
Reverse 5′-CAGGCCCTCACCTGGATG-3′
E7 Forward 5′-CCTGACCCTCTGAAACCTCCT-3′ 204 62
Reverse 5′-GCGATCCCCACTCCCAC-3′
E8 Forward 5′-TCGATGCGCATATTGATTTC-3′ 181 62
Reverse 5′-CTGCAGGTGGTGCCTGTA-3′
E9 Forward 5′-CCCAAAGCAGCCTTCGTC-3′ 234 62
Reverse 5′-cCTGGTCCAGGTTGTTGCTGTCC-3′
 MYD88 E1-1 Forward 5′-CTCGGGGCTCCAGATTGTA-3′ 327 58
Reverse 5′-GCCGGATCTCCAAGTACTCA-3′
E1-2 Forward 5′-GCTGCTCTCAACATGCGAGT-3′ 317 62
Reverse 5′-GGAAAGTCAGCCTCCTCACC-3′
E2 Forward 5′-CTGGATCCTGACTGTGGGTAA-3′ 281 62
Reverse 5′-GCTTCAAACACCCATGCTCT-3′
E3 Forward 5′-TCTGACCACCACCCTTGTG-3′ 264 62
Reverse 5′-CAGGGCAGGGCTTCATGC-3′
E4 Forward 5′-GGCCCTTCCTGAAGCTATTC-3′ 270 62
Reverse 5′-TGGTACTGCATCCACAGTCC-3′
E5 Forward 5′-GTTGAAGACTGGGCTTGTCC-3′ 292 59
Reverse 5′-AGGAGGCAGGGCAGAAGTA-3′
 CD79A E5 Forward 5′-ATGAAGTGAGTGAAGGGTGGG-3′ 326 58
Reverse 5′-AGAATGTCCCAGGGAAGTGAG-3′
 CD79B E5 Forward 5′-TAGGTGGCTGTCTGGTCAATG-3′ 306 58
Reverse 5′-TGTTCTTGCAGAATGCACCTC-3′
E6 Forward 5′-CTGGAGACAAATGGCAGCTC-3′ 362 58
Reverse 5′-CACCTACGAGGTAAGGAGAGGG-3′
 PRDM1 E1 Forward 5′-GGAGAATGTGGACTGGGTAG-3′ 220 55
Reverse 5′-TAAGTGCACTAAAGCAGAAGC-3′
E2-1 Forward 5′-TGTATTAGTCATAGCCTCTCA-3′ 367 55
Reverse 5′-CTCTTCAAACTCAGCCTCTGT-3′
E2-2 Forward 5′-TGTGAGGTTTCAGGGATTGGCAGA-3′ 261 55
Reverse 5′-AGGTCCCCAATCTTCTTGTC-3′
E3 Forward 5′-TTGTATTACTACTTGACAGTCC-3′ 258 55
Reverse 5′-TTCCTAACATTTAATGGGTCTG-3′
E4-1 Forward 5′-GTTTATTCTGAGAGGTGCTGG-3′ 253 55
Reverse 5′-CAAGAAGTTCCTGGTTGGCA-3′
E4-2 Forward 5′-ATGTGAATCCAGCACACTCTC-3′ 289 55
Reverse 5′-TCCAACACATGACAAAGCCGT-3′
E5-1 Forward 5′-TTGCTTCAGTTCTCTCTAGCC-3′ 243 55
Reverse 5′-TTCTAAAGTCATCGAGGTCC-3′
E5-2 Forward 5′-TCCTAAAATTGGACTCCAACC-3′ 294 55
Reverse 5′-TGGAGCTCTTGAGGCTTTGGT-3′
E5-3 Forward 5′-AGACTTTTTGAAAGCTTCC-3′ 300 55
Reverse 5′-TTGTACGAGGGGATGAAAGCTG-3′
E5-4 Forward 5′-TACGCTTACTTGAACGCGTC-3′ 278 55
Reverse 5′-AGAGAAGTGGGGTTGAGCAT-3′
E5-5 Forward 5′-ATCAACAACTTTGGCCTCTTC-3′ 296 55
Reverse 5′-TTGGGCTGCACCACATGTTCT-3′
E5-6 Forward 5′-ATGAAGGACAAGGCCTGTAG-3′ 314 55
Reverse 5′-CAAACACAAGCATGCACTCAC-3′
E6 Forward 5′-AACACTTGAGTCTTGGAGCAG-3′ 267 55
Reverse 5′-GTGACTCACAGACATTTTCTA-3′
E7-1 Forward 5′-TTGGCAACTCTTAATCTTCTGG-3′ 284 55
Reverse 5′-TCAGGTGAACCTTGAGGCTACAG-3′
E7-2 Forward 5′-CCAAGTTCACCCAGTTTGTG-3′ 297 55
Reverse 5′-TTCTGACCACGGCCAGAATTTC-3′
E7-3 Forward 5′-TGACATCAGTGACAATGCTGAC-3′ 313 55
Reverse 5′-ACTCACCAAGTCATAACTTA-3′
 TP53 E5 Forward 5′-CACTTGTGCCCTGACTTTCA-3′ 267 64
Reverse 5′-AACCAGCCCTGTCGTCTCT-3′
E6 Forward 5′-GAGAGACGACAGGGCTGGT-3′ 231 62
Reverse 5′-CACTGACAACCACCCTTAACC-3′
E7 Forward 5′-CCTGCTTGCCACAGGTCT-3′ 295 62
Reverse 5′-GTGATGAGAGGTGGATGGGTAG-3′
E8 Forward 5′-GGACAGGTAGGACCTGATTTCC-3′ 257 64
Reverse 5′-TGAATCTGAGGCATAACTGCAC-3′
E9 Forward 5′-GACCAAGGGTGCAGTTATGC-3′ 277 62
Reverse 5′-ACCAGGAGCCATTGTCTTTG-3′
E10 Forward 5′-AACTTGAACCATCTTTTAACTCAGG-3′ 242 62
Reverse 5′-GAATCCTATGGCTTTCCAACCT-3′
 TNFAIP3 E2a Forward 5′-CTGCAGGCAGCTATAGAGGAG-3′ 272 58
Reverse 5′-CGAAACTGAGGACAAAACTGG-3′
E2b Forward 5′-GCAATATGCGGAAAGCTGTG-3′ 300 58
Reverse 5′-GCTATCACCCAGGCAAAAGA-3′
E3 Forward 5′-TTGCTGGGTCTTACATGCAG-3′ 378 58
Reverse 5′-GCTTCGCTTAGCCAAATTCA-3′
E4 Forward 5′-GGGAGTACAGGATACATTCAAGC-3′ 251 58
Reverse 5′-AAGGCATAAGGCTGAAAGCA-3′
E5 Forward 5′-ACCTAAGGGCCTCATTTTCC-3′ 275 58
Reverse 5′-GCAAAAAGGAAAACCCTGATG-3′
E6 Forward 5′-TGAGATCTACTTACCTATGGCCTTG-3′ 315 58
Reverse 5′-TCAGGTGGCTGAGGTTAAAGA-3′
E7a Forward 5′-ACAGGCCTGCATTTCAGTG-3′ 282 58
Reverse 5′-GGAAGGTTCCATGGGATTC-3′
E7b Forward 5′-GCAGGAAAACAGCGAGCA-3′ 272 58
Reverse 5′-CCAAGGGCTCATAGGCTTCT-3′
E7c Forward 5′-ACTCCCAAAGCTGAACTCCA-3′ 304 58
Reverse 5′-GGGATCCAAGTGCCTTGT-3′
E7d Forward 5′-ACTGCCATGAAGTGCAGGAG-3′ 279 58
Reverse 5′-ATCTGACTTGGAACGCTGGT-3′
E7e Forward 5′-TGCAGTACTTGCTTCAAAAGGA-3′ 313 58
Reverse 5′-CCACTTCACTCACGTTTGTTTT-3′
E8 Forward 5′-GGGGTGACCCCTATGTGGTACT-3′ 293 58
Reverse 5′-CCAGTTGCTCTTCTGTCCTTTT-3′
E9a Forward 5′-GTGCTCTCCCTAAGAAATGTGAG-3′ 205 58
Reverse 5′-CTGGTTGGGATGCTGACACT-3′
E9b Forward 5′-CTCTGCATGGAGTGTCAGCAT-3′ 257 58
Reverse 5′-GGGTTCAGAGGATAGCACCA-3′

DLBCL, diffuse large B-cell lymphoma; E, exon.