Figure 3.

Gene comparison of distribution and expression levels. Comparison of the log2 fold change (A) and expression (B) distributions among genes at different thresholds for removing reads overlapping low complexity (LC) regions. "All kept"/"Reads without LC overlaps" - metrics of all differentially expressed genes detected using all/none reads overlapping LC regions; "75%/50%/25% LC overlaps removed" - metrics of genes that became non-differentially expressed after removing reads overlapping LC regions at least 75%/50%/25%, respectively.