Table 2.
Target gene | Nucleotide sequence (5′–3′) | Annealing temperature (°C) | Product size (bp) | References |
---|---|---|---|---|
blaTEM | F: CATTTCCGTGTCGCCCTTATTC R: CGTTCATCCATAGTTGCCTGAC |
58 | 800 | Luo et al., 2011 |
blaSHV | F: AGCCGCTTGAGCAAATTAAAC R: ATCCCGCAGATAAATCACCAC |
58 | 713 | Luo et al., 2011 |
blaCTX−M−1 group | F: TTAGGAARTGTGCCGCTGYAa R: CGATATCGTTGGTGGTRCCATa |
55 | 688 | Luo et al., 2011 |
blaCTX−M−2 group | F: CGTTAACGGCACGATGAC R: CGATATCGTTGGTGGTRCCATa |
55 | 404 | Luo et al., 2011 |
blaCTX−M−9 group | F: TCAAGCCTGCCGATCTGGT R: TGATTCTCGCCGCTGAAG |
58 | 561 | Luo et al., 2011 |
blaCTX−M−8∕25 group | F: AACRCRCAGACGCTCTACa R: TCGAGCCGGAASGTGTYATa |
55 | 326 | Luo et al., 2011 |
qnrA | F: TCAGCAAGAGGATTTCTCA R: GGCAGCACTATTACTCCCA |
58 | 627 | Robicsek et al., 2005 |
qnrB | F: GATCGTGAAAGCCAGAAAGC R: ACGATGCCTGGTAGTTGTCC |
53 | 469 | Gay et al., 2006 |
qnrS | F: ACGACATTCGTCAACTGCAA R: TAAATTGGCACCCTGTAGGC |
53 | 417 | Gay et al., 2006 |
qnrC | F: GGGTTGTACATTTATTGAATC R: TCCACTTTACGAGGTTCT |
52 | 447 | Wang et al., 2009 |
qnrD | F: CGAGATCAATTTACGGGGAATA R: AACAAGCTGAAGCGCCTG |
52 | 582 | Cavaco et al., 2009 |
aac(6')-Ib | F: TTGCGATGCTCTATGAGTGGCTA R: CTCGAATGCCTGGCGTGTTT |
55 | 482 | Park et al., 2006 |
qepA | F: AACTGCTTGAGCCCGTAGAT R: GTCTACGCCATGGACCTCAC |
55 | 596 | This study |
oqxA | F: GCGTCTCGGGATACATTGAT R: GGCGAGGTTTTGATAGTGGA |
56 | 482 | This study |
oqxB | F: CTGGGCTTCTCGCTGAATAC R: CAGGTACACCGCAAACACTG |
55 | 498 | This study |
intI1 | F: CCTCCCGCACGATGATC R: TCCACGCATCGTCAGGC |
54 | 280 | Dillon et al., 2005 |
intI2 | F: AAATCTTTAACCCGCAAACGC R: ATGTCTAACAGTCCATTTTTAAATTCTA |
54 | 439 | Dillon et al., 2005 |
intI3 | F: AGTGGGTGGCGAATGAGTG R: TGTTCTTGTATCGGCAGGTG |
54 | 599 | Dillon et al., 2005 |
IntI1 variable region | F: TCATGGCTTGTTATGACTGT R: GTAGGGCTTATTATGCACGC |
56 | Variable | White et al., 2000 |
Y = T or C; R = A or G; S = G or C; D = A or G or T.
F, forward; R, reverse.