Table 2. Summary of specificities of several characterised GH27 enzymes, and motivation for the mutations of CpArap27.
CpArap27 variant form | Equivalent previously characterised enzyme | |||
---|---|---|---|---|
Enzyme | Ara:Gal ratio a | Enzyme | k cat / K m | Ara:Gal ratio a |
Wild-type | Ara only | GsAbp | Ara:495 [42] | Ara (trace pNP-α-D-Galp, pNP-α-L-Araf) |
I56E | Ara only | SaArap27A | Ara:88.1 Gal:0.5 [41] | 196:1 |
I56D | 142:1 | ScaGal | Gal:63.6 [21] | Gal only |
I56D | 142:1 | SaArap27A E99D | Ara:1.5 Gal:6.7 [41] | 1:4.4 |
I56C | 1:2.2 | FoAp1 | Ara:9.2 Gal: 9.9 [50] | 1.1:1 |
I56C | 1:2.2 | FoAp2 | Ara:8.1 Gal:0.6 [50] | 13.6:1 |
I56A | 1:1.4 | No examples | - | - |
Kinetic parameters for several GH27 enzymes, with different substrate specificities and different amino acids in a key active site position, are compared. Kinetic parameters for all forms of CpArap27 are given in Table 1. The Ara:Gal ratios were determined by dividing k cat / K m values and normalising the smaller value to 1.
a The Ara:Gal ratio of each enzyme or enzyme variant compares k cat / K m for hydrolysis of pNP-β-l-Arap and pNP-α-d-Galp respectively.