Table 1. Primers used for Real-Time PCR amplification of the genes studied in C. riparius.
Gene | Name | DNA sequence (5′-3′) | Fragment size (bp) | Efficiency (%) |
---|---|---|---|---|
actin | Forward | GATGAAGATCCTCACCGAACG | 201 | 104 |
Reverse | CGGAAACGTTCATTACCG | |||
GAPDH | Forward | GGTATTTCATTGAATGATCACTTTG | 110 | 96.6 |
Reverse | TAATCCTTGGATTGCATGTACTTG | |||
26S | Forward | TTCGCGACCTCAACTCATGT | 220 | 90.4 |
Reverse | CCGCATTCAAGCTGGACTTA | |||
EcR | Forward | CCATCGTCATCTTCTCAG | 180 | 106.6 |
Reverse | TGCCCATTGTTCGTAG | |||
usp | Forward | GCCCAATCATCCGTTAAGTGG | 114 | 108.1 |
Reverse | CGTTTGAAGAATCCTTTACATCC | |||
E74 | Forward | TCTTACTGAAACTTCTTCAAGATCG | 111 | 103.2 |
Reverse | GCTTTGAGACAGCTTTGGAATCG | |||
vg | Forward | GATTGTTCCATGTGCAG | 215 | 112.3 |
Reverse | TTTGAGTATGGTGGAGAATC | |||
hsp70 | Forward | ACTTGAACCAGTTGAGCGT | 132 | 103.8 |
Reverse | TTGCCACAGAAGAAATCTTG | |||
hsc70 | Forward | CGTGCTATGACTAAGGACAA | 239 | 99.3 |
Reverse | GCTTCATTGACCATACGTTC | |||
rpL13 | Forward | AAGCTGCTTTCCCAAGAC | 351 | 109.3 |
Reverse | TTGGCATAATTGGTCCAG |