Table 3.
Averaged peptide penetration depth based on the AT 60/64 and 30/34 simulation series
Peptide | COM from bilayer center ± S.D. (nm) | Trp residue COM from bilayer center ± S.D. (nm) | Trp residue COM from peptide COM ± S.D. (nm) | |||
---|---|---|---|---|---|---|
60/64 | 30/34* | 60/64 | 30/34 | 60/64 | 30/34 | |
WT | 1.84 ± 0.16 | 1.78 ± 0.12 | 1.20 ± 0.16 | 1.14 ± 0.11 | −0.64 ± 0.06 | −0.64 ± 0.07 |
K8E | 1.88 ± 0.24 | 1.89 ± 0.20 | 1.39 ± 0.32 | 1.44 ± 0.35 | −0.49 ± 0.12 | −0.44 ± 0.18 |
K15E | 1.70 ± 0.15 | 1.71 ± 0.11 | 1.08 ± 0.17 | 1.08 ± 0.12 | −0.63 ± 0.06 | −0.64 ± 0.06 |
K20E | 1.62 ± 0.15 | 1.70 ± 0.12 | 1.06 ± 0.18 | 1.19 ± 0.20 | −0.56 ± 0.11 | −0.51 ± 0.11 |
K22E | 1.69 ± 0.14 | 1.71 ± 0.11 | 1.07 ± 0.17 | 1.10 ± 0.15 | −0.62 ± 0.09 | −0.51 ± 0.09 |
K25E | 1.90 ± 0.17 | 1.81 ± 0.10 | 1.23 ± 0.17 | 1.14 ± 0.10 | −0.67 ± 0.06 | −0.67 ± 0.06 |
K28E | 1.84 ± 0.16 | 1.82 ± 0.21 | 1.28 ± 0.19 | 1.27 ± 0.30 | −0.56 ± 0.09 | −0.55 ± 0.12 |
For the peptide penetration depth based on the 30/34 simulations, S.D. (nm) of the means of the fifteen simulations was as follows; WT, 0.09; K8E, 0.17; K15E, 0.08; K20E, 0.09; K22E, 0.08; K25E, 0.07 and K28E, 0.20. The depths of the mutants based on the latter set were significantly different from that of WT with p<10−7 (t-test) for K25E and with smaller p-values (i.e., greater significances) for the other mutants.