TABLE 2 .
Histone-regulated genes associated with S-layer synthesis and glycosylation
| Gene ID | Annotationa | GE ratiob | Homologc | E value |
|---|---|---|---|---|
| VNG0001H | S-layer domain | −1.17 | NA | NA |
| VNG0062G | Glycosyltransferase | −1.59 | NA | NA |
| VNG1048G | Predicted UDP-glucose 6-dehydrogenase | −1.64 | aglM, HVO1531 | 2.00E−108 |
| VNG1055G | dTDP-glucose pyrophosphorylase | −1.02 | aglF, HVO1527 | 4.00E−108 |
| VNG1062G | Glycosyltransferase | −1.23 | aglI, HVO1528 | 3.00E−46 |
| VNG2679G | Cell surface protein | −1.05 | csg, HVO2072 | 2.00E−155 |
a
Annotations from arCOG (33). Details of arCOG annotations for each differentially expressed gene are listed in Table S2 in the supplemental material.
b
GE ratio, log2 gene expression ratio of ΔhpyA::Δura3 during stationary phase.
c
Homolog, experimentally characterized homolog with greatest amino acid similarity to encoded proteins. HVO numbers correspond to gene identifiers in the Haloferax volcanii genome (68). NA, no experimentally characterized homolog.