Table 3.

Average z-score computed from the alignment score using different index coverage. We use $\mathit{\text{cover}}\left(\mathcal{F}\right)=$ 60 %, 70 % and 80 %. In all these cases, the alignment subnetworks are found to be statistically very significant

	0 insert, 0 delete				1 insert, 0 delete				0 insert, 1 delete
							Index Coverage
	Sequence	60 %	70 %	80 %	ColT	60 %	70 %	80 %	ColT	60 %	70 %	80 %	ColT
	mutation
H. Pylori	0 %	28.99	28.99	28.99	28.99	24.92	25.18	27.49	28.32	26.16	26.16	26.80	26.80
	5 %	28.77	29.05	29.56	29.56	25.57	25.59	26.20	28.62	24.89	24.89	26.62	26.62
	10 %	25.49	28.82	30.15	30.15	22.53	26.43	27.90	29.22	25.26	25.73	27.42	27.42
	20 %	25.14	28.24	29.78	29.78	22.41	26.43	28.43	30.61	26.81	26.81	28.03	28.04
E. coli	0 %	30.25	30.25	31.13	31.13	24.01	24.11	28.93	29.60	25.38	25.38	26.64	26.64
	5 %	28.99	28.99	31.06	31.06	26.39	26.75	31.14	31.02	25.60	25.60	27.48	27.48
	10 %	26.53	28.62	30.10	30.10	21.68	24.99	25.42	30.76	23.84	26.26	27.79	27.79
	20 %	31.65	31.65	32.08	32.08	30.89	30.91	31.82	32.65	28.07	28.07	29.00	29.55
M. musculus	0 %	15.37	15.37	18.05	18.08	8.64	10.15	13.00	14.80	13.77	14.57	16.72	16.72
	5 %	12.46	12.61	17.49	18.34	8.86	9.97	10.40	15.28	14.93	15.42	16.93	16.93
	10 %	13.86	15.25	16.30	19.11	10.22	11.86	12.87	15.42	15.34	15.34	15.89	17.60
	20 %	14.04	15.51	20.45	20.47	9.11	11.10	11.40	16.66	14.99	15.67	18.90	18.90