Table 1.
Detailed representation of all the 38 fragments derived from the 22 Cameroonian URFs
| Sample ID | Fragment (nucleotides) | Position |
|---|---|---|
| AY371143 | AY371143_1 (1200) | Embedded in A1 |
| AY371143_2 (2411) | Near the base of CRF02_AG | |
| AY371145 | AY371145_1 (2578) | Embedded in CRF22_01A1 |
| AY371145_2 (3118) | Embedded in CRF02_AG | |
| AY371147 | AY371147_1 (6189) | Near the base of CRF02_AG |
| AY371160 | AY371160_1 (1779) | Embedded in F2 |
| AY371160_2 (4275) | Embedded in CRF22_01A1 | |
| AY371161 | AY371161_1 (2222) | Outside of H |
| AY371161_2 (3652) | Outside of 09_cpx | |
| AY371166 | AY371166_1 (2058) | Outside of 06_cpx |
| AY371166_2 (3307) | Outside of 18_cpx | |
| AY371170 | AY371170_1 (2317) | Embedded in D |
| AY371170_2 (1328) | Embedded in F2 | |
| AY371170_3 (1796) | Outside of CRF01_AE | |
| GU201497 | GU201497_1 (5592) | Near the base of CRF02_AG |
| GU201503 | GU201503_1 (1787) | Embedded in CRF22_01A1 |
| GU201503_2 (2943) | At the base of CRF02_AG | |
| GU201503_3 (1501) | Embedded in CRF22_01A1 | |
| GU201504 | GU201504_1 (4775) | Near the base of CRF02_AG |
| GU201504_2 (982) | Embedded in A1 | |
| GU201506 | GU201506_1 (2203) | At the base of CRF02_AG |
| GU201506_2 (2529) | Embedded in F2 | |
| GU201506_3 (1324) | Embedded in D | |
| GU201507 | GU201507_1 (7653) | Outside of CRF36_cpx |
| GU201508 | GU201508_1 (3067) | Did not cluster with a known clade |
| GU201509 | GU201509_1 (3052) | Embedded in G |
| GU201509_2 (3427) | At the base of CRF02_AG | |
| GU201510 | GU201510_1 (6322) | Outside of CRF11_cpx |
| KR017771a | KR017771_1 (1248) | Near the base of CRF02_AG |
| KR017771_2 (3224) | Embedded in F2 | |
| KR017772a | KR017772_1 (3556) | Embedded in CRF02_AG |
| KR017772_2 (2138) | Embedded in A1 | |
| KR017773a | KR017773_1 (3041) | Near the base of CRF02_AG |
| KR017774a | KR017774_1 (7899) | Embedded in CRF36_cpx |
| KR017777a | KR017777_1 (2301) | Embedded in CRF02_AG |
| KR017778a | KR017778_1 (7313) | Near the base of CRF11_cpx |
| KR017779a | KR017779_1 (3562) | Embedded in CRF22_01A1 |
| KR017779_2 (1101) | Embedded in F2 |
aNewly sequenced Cameroonian viruses.