Table 1.
Genus | Haplotype | Frequency | Frequency Ba | Frequency Xb | BLAST lineage | Identity |
---|---|---|---|---|---|---|
Plasmodium | EMEL01 | 31 | 0 | 31 | SGS1 | 479/479 (100 %) |
PAPA01 | 1 | 0 | 1 | SGS1 | 458/459 (99 %) | |
EMGO01 | 2 | 0 | 2 | GRW06 | 478/479 (99 %) | |
EMGO02 | 1 | 0 | 1 | SGS1 | 477/479 (99 %) | |
EMEL02 | 6 | 0 | 6 | ALARV04 | 479/479 (100 %) | |
PAMO01 | 1 | 0 | 1 | ALARV04 | 478/479 (99 %) | |
PAPA02 | 1 | 0 | 1 | ALARV04 | 418/420 (99 %) | |
PHPR01 | 5 | 0 | 5 | SYBOR02 | 433/433 (100 %) | |
FIPA01 | 5 | 2 | 3 | BT7 | 479/479 (100 %) | |
ANHO01 | 1 | 1 | 0 | BT7 | 474/475 (99 %) | |
ANHO02 | 7 | 2 | 5 | TURDUS1 | 479/479 (100 %) | |
SATO01 | 1 | 1 | 0 | EMSPO06 | 479/479 (100 %) | |
Haemoproteus | ACAE01 | 21 | 3 | 18 | RW2 | 474/476 (99 %) |
PHPR02 | 2 | 0 | 2 | RW2 | 476/479 (99 %) | |
AECA01 | 2 | 0 | 2 | RW2 | 475/479 (99 %) | |
AECA02 | 2 | 0 | 2 | RW2 | 458/461 (99 %) | |
AECA03 | 16 | 4 | 12 | FIPAR02 | 446/447 (99 %) | |
EMEL03 | 19 | 2 | 17 | HLW1 | 478/478 (100 %) | |
MUDA01 | 1 | 1 | 0 | ROBIN1 | 472/476 (99 %) | |
AECA04 | 1 | 0 | 1 | FIPAR02 | 462/464 (99 %) | |
ANHO03 | 4 | 4 | 0 | YWT3 | 477/479 (99 %) | |
EMGO03 | 1 | 0 | 1 | EMSPO01 | 479/479 (100 %) | |
EMTR01 | 1 | 0 | 1 | RW2 | 476/479 (99 % | |
FIPA02 | 1 | 1 | 0 | PAGRI04 | 419/431 (97 %) | |
FIPA03 | 1 | 1 | 0 | FIPAR02 | 459/464 (99 %) | |
PAMA01 | 1 | 0 | 1 | RW2 | 476/479 (99 %) | |
PAMA02 | 1 | 0 | 1 | RW2 | 476/479 (99 %) | |
PHPR03 | 1 | 0 | 1 | RW2 | 475/479 (99 %) | |
Leucocytozoon | EMPU02 | 1 | 0 | 1 | TROAED09 | 470/478 (98 %) |
PAMA03 | 1 | 0 | 1 | PYJOC02 | 440/450 (98 %) | |
PAMA04 | 2 | 0 | 2 | PYJOC02 | 467/476 (98 %) | |
PAVE01 | 1 | 0 | 1 | PYJOC02 | 394/404 (98 %) | |
PAMO02 | 1 | 0 | 1 | PYJOC02 | 419/428 (98 %) | |
PAVE02 | 1 | 0 | 1 | TRPIP2 | 416/422 (99 %) | |
PAVE03 | 2 | 0 | 2 | PARUS8 | 444/446 (99 %) | |
PHIN01 | 1 | 0 | 1 | PARUS8 | 418/430 (97 %) | |
PHPR04 | 1 | 0 | 1 | RS2 | 430/430 (100 %) | |
SIEU01 | 1 | 0 | 1 | HYBOR02 | 446/446 (100 %) | |
PHPR05 | 4 | 0 | 4 | BT5 | 383/383 (100 %) | |
EMTR02 | 1 | 0 | 1 | SBBS1 | 426/430 (99 %) | |
FIPA04 | 1 | 1 | 0 | SFC8 | 401/401 (100 %) | |
TACY01 | 1 | 0 | 1 | BT1 | 428/428 (100 %) | |
Undefinedc | CAPU01 | 1 | 1 | 0 | FULEU01 | 298/316 (94 %) |
EMPU01 | 1 | 1 | 0 | SW3 | 300/315 (95 %) |
aFrequency in the BNU campus (B)
bFrequency in Xiaolongmen Forest Park (X)
cThese two haplotypes both showed the closest relationship with lineages belonging to Haemoproteus according to BLAST result, but clustered together with Leucocytozoon lineages in phylogenetic tree with low support