Table 3.
Summary of samples and RNA-seq data
| Groups | Total reads | Clean reads | Sub-genome | Mapped reads | Mapping ratio (%) | Total mapping ratio (%) | Mapped reads -u | Mapping ratio (%) -u | Total mapping ratio (%) -u |
|---|---|---|---|---|---|---|---|---|---|
| Wild-1 | 23,271,884 | 22,088,185 | A | 17,586,172 | 79.6 | 86.5 | 13,102,552 | 59.3 | 74.6 |
| B | 17,813,886 | 80.6 | 13,140,929 | 59.5 | |||||
| Wild-2 | 27,577,198 | 26,160,151 | A | 20,700,875 | 79.1 | 85.9 | 15,242,936 | 58.3 | 73.7 |
| B | 21,023,950 | 80.4 | 15,242,734 | 58.3 | |||||
| Cultivar-1 | 17,740,180 | 16,773,599 | A | 13,527,727 | 80.6 | 87.4 | 9,474,682 | 56.5 | 71.3 |
| B | 13,783,371 | 82.2 | 9,535,891 | 56.9 | |||||
| Cultivar-2 | 29,551,798 | 27,977,895 | A | 22,256,822 | 79.6 | 86.6 | 16,395,908 | 58.6 | 74.3 |
| B | 22,663,043 | 81.0 | 16,290,987 | 58.2 | |||||
| Landrace-1 | 23,082,003 | 21,898,663 | A | 16,563,967 | 75.6 | 85.3 | 14,141,135 | 64.6 | 83.1 |
| B | 16,971,148 | 77.5 | 14,275,683 | 65.2 | |||||
| Landrace-2 | 26,163,934 | 24,724,657 | A | 18,580,284 | 75.1 | 84.4 | 15,687,853 | 63.5 | 81.9 |
| B | 19,196,718 | 77.6 | 15,843,276 | 64.1 | |||||
| Total | 147,386,997 | 139,623,150 |