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. 2015 Sep 21;112(40):12384–12389. doi: 10.1073/pnas.1504986112

Table S3.

Computed pKa values of ionizable residues in apo-XynII and its Michaelis complex containing xylohexaose substrate

Glu177 in downward conformation Glu177 in upward conformation Glu177 in downward conformation Glu177 in upward conformation
Residue pD4.8 pD4.8 pD6.2 pD6.2 ΔpKaI ΔpKaI Michaelis complex Michaelis complex Michaelis complex Michaelis complex ΔpKaII ΔpKaII
εint = 10 εint = 4 εint = 10 εint = 4 εint = 10 εint = 4 εint = 10 εint = 4 εint = 10 εint = 4 εint = 10 εint = 4
Glu86 3.5 2.9 3.9 3.7 −0.4 −0.8 2.2 1.0 2.6 2.0 −0.4 −1.0
Glu177 6.0 8.3 5.3 5.9 +0.7 +2.4 8.5 >12.0 7.8 >12.0 +0.7 N/A

ΔpKaI is the difference in pKa values between the structures with Glu177 in the upward (pD6.2) and downward (pD4.8) conformations. ΔpKaII is the difference in pKa values in the Michaelis complexes with Glu177 in the downward or upward conformations.