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. 2015 Oct 12;15:246. doi: 10.1186/s12870-015-0636-9

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© Gonzalez et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Differentially expressed gene distribution and abundance weighted fold change. Fold change (FC) distribution of DE genes (top) per treatment. The origin (organism) of genes with FC increases of >1 (log₁₀) in non-contaminated trees is highlighted (dashed line and pie chart). Individual (normalised mean) transcript counts (fpkm) per differentially expressed gene (bottom) are segregated by fold change for a weighted view of differential expression. The higher of the two treatments is shown for each DE gene. Major peaks in abundance weighted FC are highlighted and labelled. PAL phenylalanine ammonia lyase. PPDE >=0.95