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. 2015 Oct 13;10(10):e0139668. doi: 10.1371/journal.pone.0139668

Fig 6. Phylogenetic analyses of the Sicinivirus strain JSY.

Fig 6

Phylogenetic relationship between Sicinivirus strain JSY and the representative members of the 29 officially recognized genera based upon the complete amino acid sequences of picornavirus P1, 2C, and 3D coding regions. The phylogenetic tree was constructed using the Molecular Evolutionary Genetics Analysis (MEGA) [17] applying the maximum-likelihood method based on the JTT matrix-based model [18], the robustness of the phylogenetic constructions was evaluated by bootstrapping with 1,000 replicates, initial trees for the heuristic search were obtained automatically by applying neighbour-join and BioNJ algorithms.