Table 2.
Numbers of reads for each small RNA classification identified
| Read types | Small libraries | Average | ||
|---|---|---|---|---|
| Control | Ethylene | 1-MCP | ||
| Total | 4,244,311 (100 %) | 9,011,022 (100 %) | 2,654,040 (100 %) | 5,303,124 |
| Sequences mapped to genome | 3,504,905 (82.58 %) | 7,779,447 (86.33 %) | 2,253,332 (84.9 %) | 4,512,561 |
| Known_miRNA | 84,534 (1.99 %) | 278,076 (3.09 %) | 79,887 (3.01 %) | 147,499 |
| Novel_miRNA | 6,569 (0.15 %) | 24,746 (0.27 %) | 5,232 (0.20 %) | 12,182 |
| NAT | 335,003 (7.89 %) | 982,987 (10.91 %) | 192,444 (7.25 %) | 503,478 |
| TAS | 107 (0.00 %) | 120 (0.00 %) | 77 (0.00 %) | 101 |
| rRNA etca | 368,684 (8.69 %) | 1,189,320 (13.20 %) | 252,346 (9.51 %) | 603,450 |
| Repeat | 195,636 (4.61 %) | 389,021 (4.32 %) | 95,972 (3.62 %) | 226,876 |
| Exon_sense | 63,740 (1.50 %) | 247,752 (2.75 %) | 43,521 (1.64 %) | 118,337 |
| Exon_antisense | 20,298 (0.48 %) | 50,874 (0.56 %) | 13,656 (0.51 %) | 28,276 |
| Intron_sense | 62,933 (1.48 %) | 131,964 (1.46 %) | 31,316 (1.18 %) | 75,404 |
| Intron_antisense | 58,311 (1.37 %) | 124,767 (1.38 %) | 31,022 (1.17 %) | 71,366 |
| Un_annotated | 2,309,090 (54.4 %) | 4,359,820 (48.38 %) | 1,507,859 (56.81 %) | 2,725,590 |
arRNA/snRNA/snoRNA/tRNA considered; TAS trans-acting small interfering RNA, NAT natural antisense short interfering RNA