Table 4.
Putative novel non-coding RNAs expressed in B. cenocepacia and experimentally confirmed by previous studies
| Preliminary name | Strand | Length (nt)b | Terminator sequence | Adjacent genes | Relative orientation | Genome position | Replicon | Type of experiment | |
|---|---|---|---|---|---|---|---|---|---|
| ncS04 | + | 105 | yes | BCAL0264 | BCAL0265 | ← → ← | 292949..293053 | 1 | Co-purification with Hfq [40] |
| ncS06 | + | 117 | no | BCAL0549 | BCAL0550 | → → ← | 603652..603828 | 1 | RNA-Seq and Northern blot [36] |
| ncS11 | - | 208 | yes | BCAL2293 | BCAL2294 | → ← ← | Complement (2545296..2545503) | 1 | RNA-Seq [36] |
| ncS18 | + | 178 | no | BCAL2713 | BCAL2714 | → → → | 2979006..2979183 | 1 | RNA-Seq [36] |
| ncS21a | + | 361 | yes | BCAL2737 | BCAL2738 | → → → | 3008232..3008591 | 1 | RNA-Seq [36] |
| ncS33 | + | 93 | no | BCAM1725 | BCAM1726 | → → → | 1926664..1926756 | 2 | RNA-Seq [36] |
| ncS36 | + | 60 | no | BCAM2207 | BCAM2208 | ← → → | 2468880..2468939 | 2 | RNA-Seq [36] |
ancS21 is associated with an open reading frame and potentially constitutes a protein, see Additional file 6: Table S5
bLength of non-coding RNAs is inferred from dRNA-Seq data and terminator structures (when present) and is not yet experimentally confirmed