Table 5.
A core set of candidate genes with reported or putative functions in stress responses
| Sequence ID | Description | BLAST E-valuea | Protein description at TAIR obtained by BLASTX with the Salix sequence |
|---|---|---|---|
| c34790_g1_i6 | ap2-like ethylene-responsive transcription factor ail5 | 5.2 × 10−75 | Encodes a member of the AP2 family of transcriptional regulators. |
| c19050_g1_i3 | bzip transcription factor 60 | 4.2 × 10−144 | Consists of a bZIP DNA binding domain followed by a putative transmembrane domain. |
| c25859_g1_i2 | Chlorophyll a-b binding protein chloroplastic | 6.5 × 10−161 | Photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus. |
| c16933_g1_i1 | Chlorophyll a-b binding chloroplastic | 2.5 × 10−175 | PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA. |
| c3652_g1_i1 | Chlorophyll a-b binding protein chloroplastic | 5.1 × 10−157 | Encodes a component of the light harvesting complex associated with photosystem I. |
| c28579_g1_i2 | Chloroplast stem-loop binding protein of 41 kda chloroplastic | 0 | Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. |
| c22127_g1_i1 | Dehydrin | 5.0 × 10−93 | Encodes a gene induced by low temperature and dehydration. |
| c16392_g1_i1 | Ethylene-responsive transcription factor 4-like | 4.1 × 10−42 | Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). |
| c20465_g2_i1 | Heat shock transcription factor a2 isoform 1 | 1.3 × 10−57 | Member of Heat Stress Transcription Factor (Hsf) family. |
| c23076_g1_i1 | Heat stress transcription factor a-3 | 0 | Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A. |
| c33073_g3_i1 | Heat stress transcription factor a-6b | 2.9 × 10−98 | Member of Heat Stress Transcription Factor (Hsf) family. |
| c14799_g1_i1 | Heat stress transcription factor a-6b-like | 5.7 × 10−127 | Member of Heat Stress Transcription Factor (Hsf) family |
| c32554_g10_i1 | Heat stress transcription factor b-2b | 5.1 × 10−96 | Member of Heat Stress Transcription Factor (Hsf) family |
| c29038_g2_i1 | Heat stress transcription factor c-1 | 5.8 × 10−166 | Member of Heat Stress Transcription Factor (Hsf) family |
| c31828_g1_i3 | Mitochondrial transcription termination factor family protein isoform 1 | 0 | Encodes a putative mitochondrial transcription termination factor. |
| c6068_g1_i1 | myb-like transcription factor partial | 1.2 × 10−101 | Putative transcription factor MYB108 (MYB108) mRNA. |
| c21976_g1_i1 | myb transcription factor family protein | 2.9 × 10−179 | Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. |
| c35418_g2_i1 | Photosystem ii 10 kda chloroplastic | 8.9 × 10−75 | Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). |
| c26360_g1_i3 | Photosystem ii stability assembly factor chloroplastic | 0 | Encodes a stability and/or assembly factor of photosystem II. |
| c34906_g2_i3 | Probable wrky transcription factor 33 | 0 | Member of the plant WRKY transcription factor family. Involved in response to various abiotic stresses. |
| c31974_g2_i2 | Probable wrky transcription factor 40 | 1.7 × 10−178 | Pathogen-induced transcription factor. |
| c26874_g1_i3 | Probable wrky transcription factor 48 | 4.9 × 10−151 | Encodes WRKY48, a member of the WRKY Transcription Factor. WRKY48 is a stress- and pathogen-induced transcriptional activator that represses plant basal defense. |
| c27657_g4_i1 | Protein odorant1-like | 0 | Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. |
| c3736_g1_i1 | Protochlorophyllide chloroplastic | 1.1 × 10−82 | Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. |
| c24362_g1_i1 | Protochlorophyllide reductase-like | 0 | Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. |
| c21511_g1_i2 | Stress enhanced protein chloroplastic | 1.7 × 10−80 | Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. |
| c34938_g1_i3 | BZIP17, transcription factor | 0 | bZIP17 appears to regulate transcription as part of a salt and osmotic stress response. |
| c21535_g1_i1 | Transcription factor myb108-like | 7.1 × 10−150 | Member of the R2R3 factor gene family. |
aE-value between the sequence and the best hit in the Viridiplantae subset of the NCBI nr database