Table 3B.
Primers and estimated PCR products for 12 pairs of selected PHT unigenes.
Numbers | Unigene pair (5′ end + 3′ end) | Reference location | Possible gap | Primer: forward/reverse (5′–3′) | Designed PCR size (bp) | Estimated size (bp) |
---|---|---|---|---|---|---|
1 | Unigene91380_All + Unigene105912_All | 82–170+348–448 | 178 aa | TAGTTGTGGAGGAGAAATGG/AGGATGGAGAAGGTGACG | 558 | 1092 |
2 | Unigene5546_All + Unigene11489_All | 5′–157+229–319 | 72 aa | CTTTTGGGGCGTCTGTA/GAACCACGTGCTTGTGG | 553 | 769 |
3 | Unigene5546_All + Unigene47851_All | 5′–157+166–3′ | 9 aa | CTTTTGGGGCGTCTGTAC/TTCCCTTCGCTTTTTGTG | 677 | 704 |
4 | Unigene16022_All + Unigene50223_All | 5′–91+417–3′ | 326 aa | ATTTCATCACACACCCAG/ATTTACCCATAGACTCCG | 854 | 1832 |
5 | Unigene16022_All + Unigene90558_All | 5′–91+417–3′ | 326 aa | ATTTCATCACACACCCAGA/CAAGAGATTTACCCATAGACTC | 860 | 1838 |
6 | Unigene11489_All + Unigene63539_All | 229–319+412–493 | 93 aa | CAGATAGACGCCGATGAGG/GCAACCAAGAACAATAAGAGAG | 416 | 695 |
7 | Unigene48391_All +Unigene44133_All | 5′–63+404–3′ | 341 aa | CTTTCCACCTCAAGTCAT/GTGCAACCAAGAACAATAAGA | 587 | 1610 |
8 | Unigene53055_All + Unigene44133_All | 5′–163+404–3′ | 241 aa | TCTGTATCTCCCTCCTAAC/CCAAGAACAATAAGAGAGTT | 632 | 1355 |
9 | Unigene125621_All + Unigene61379_All | 5′–68+131–277 | 63 aa | CCCCATCTCCACTCCTGTT/AAGGTTGACGGTGGTGTTC | 566 | 755 |
10 | Unigene141416_All + Unigene129694_All | 5′–233+210–281 | none | CTGCTATCACCCCTCTTG/CCTTGGTTCAATTTTTATCC | 745 | 745 |
11 | Unigene141415_All + Unigene129694_All | 8–87+210–281 | 123 aa | AAAGTATAATGGTAGGAAGTCC/GTTCAATTTTTATCCTCAGG | 458 | 827 |
12 | Unigene29837_All + Unigene46396_All | 5′–230+292–3′ | 62 aa | GTGTTGCTTTGTGGTCCT/CCCATGTAATATTCCGGT | 962 | 1148 |
Reference location indicated the location of unigene coding protein aligning with protein database of Arabidopsis thaliana. aa, amino acid; bp, base pair.