TABLE 2.
Oligonucleotides
| Primer | Nucleotide sequence 5′-3′ | Use or location |
|---|---|---|
| JRP3867 | CGAAATTAGAAACTTGCGTTCAGTAAAC | TargeTron universal primer |
| JRP3939 | CTCAGTACTGAGAGGGAACTTAGATGGTAT | catP PCR |
| JRP3940 | CCGGGATCCTTAGGGTAACAAAAAACACC | catP PCR |
| JRP4555 | GTTTACTTTGGCGTGTTTCATTGC | ermB PCR |
| JRP4632 | AATAAGTAAACAGGTAACGTCT | ermB PCR |
| JRP4978 | TAAAACAAGAATACCAAGCACAA | Amplification of bcrRABD and bcrD |
| JRP4981 | TTTAATGAAAAGCTACAACAGCT | Amplification of bcrRABD and bcrR |
| JRP5335 | CGAGCTCTTGATAAAATACCGAGTGCAGAGG | Cloning of bcrRABD upstream of bcrR |
| JRP5336 | GGGGTACCCCCGATTTTTGCCTGCATATC | Cloning of bcrRABD downstream of bcrD |
| JRP5337 | TGAACGCAAGTTTCTAATTTCGGTTTCAATCCGATAGAGGAAAGTGTCT | EBS2 primer to retarget intron to bcrA |
| JRP5338 | AAAAAAGCTTATAATTATCCTTAATTGACACAGAAGTGCGCCCAGATAGGGTG | IBS primer to retarget intron to bcrA |
| JRP5339 | CAGATTGTACAAATGTGGTGATAACAGATAAGTCACAGAAAATAACTTACCTTTCTTTGT | EBS1 primer to retarget intron to bcrA |
| JRP5340 | TGAACGCAAGTTTCTAATTTCGATTATCTCTCGATAGAGGAAAGTGTCT | EBS2 primer to retarget intron to bcrB |
| JRP5341 | AAAAAAGCTTATAATTATCCTTAGAGATCATCTTTGTGCGCCCAGATAGGGTG | IBS primer to retarget intron to bcrB |
| JRP5342 | CAGATTGTACAAATGTGGTGATAACAGATAAGTCATCTTTACTAACTTACCTTTCTTTGT | EBS1 primer to retarget intron to bcrB |
| JRP5394 | CGCGGATCCCGGAACTGAAAAATTTGGTCGT | Complementation upstream of bcrR |
| JRP5395 | CGCGGATCCAACCCTTTAAAATAGGCTCTGAC | Complementation and probe upstream of bcrA |
| JRP5396 | GGGGTACCTTATTTCAAATCCTCCTTTTTAAA | Complementation and probe for bcrB |
| JRP5403 | GGGGTACCTTAAGCAATACCGCCACCTCCA | Complementation and probe for bcrA |
| JRP5404 | CGCGGATCCTCGTGACAAGGATAAATGATAG | Complementation and probe upstream of bcrB |