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Comparision of the alignment type between the union of all reads that support a genomic SNV, dbSNP entry, retained A-to-I change or retained non-A-to-I change for YH (A) GM12878–1 (B) and GM12878–2 (C). The bar on the left indicates the percentage of alignment types for the labeled tool, the bar on the right indicates the alignment rate for the tool with RNASequel realignment. For STAR with two passes, the alignment rate for RNASequel with STAR as a single pass is used for comparison.
