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. 2015 Oct 10;43(18):8694–8712. doi: 10.1093/nar/gkv865

Table 3. Different clusters of enhancers and promoters in high confidence (90% percentile) interaction networks.

ClusterID Regulatory Signals Comments
Enhancers
1 CTCF, DNase I, H3K4me2, RAD21 Weak in K562
2 CTCF, H3K27ac, H3K4me2, H3K9ac, RAD21 Weak in Gm12878
3 CTCF, DNase I, H3K4me2, H3K9ac, RAD21 H3K9ac missing in H1hesc
4 CTCF, DNase I, H3K4me2, H3K9ac RAD21 present, H3K9ac missing in H1hesc, HepG2
5 DNase I, H3K27ac, H3K9ac, H3K4me2
Promoters
1 CTCF, DNase I, H3K27ac, H3K4me2, H3K9ac, RAD21, TBP No TBP in Hela, and weak in Gm12878
2 DNase I, H3K27ac, H3K4me2, H3K9ac, TBP
3 CTCF, DNase I, H3K27ac, H3K36me3, H3K4me2, RAD21 Has TBP in K562
4 CTCF, DNase I, RAD21 DNase I weakly present in K562
5 CTCF, DNase I, H3K4me2, RAD21 RAD21 absent in K562, TBP, H3K27ac, H3K9ac present in K562 and Hela