Table 4. Correlations between experimental (Hsu et al. (2013) (18)) cutting frequencies at target sites containing a single rG·dG, rC·dC, rA·dA and rU·dT mismatch in the PAM-distal region (≥10th protospacer site)a and measures of guide RNA–protospacer stability.
log10(P-value) | Correlation coefficient | ||
---|---|---|---|
Hsu et al. (18) estimated cutting frequency versus guide RNA–protospacer binding energyb | −0.4400 | (0.0786) | |
Hsu et al. (18) estimated cutting frequency versus position of mismatch | −5.8258 | 0.3990 | |
Hsu et al. (18) estimated cutting frequency versus fractional time guide RNA bound at position ≥the mth protospacer site in a simulated R-loop (KMC)c | m = 14 | −9.5550 | 0.5078 |
m = 15 | −7.4854 | 0.4522 | |
m = 16 | −6.9510 | 0.4333 | |
m = 17 | −3.9270 | 0.3191 | |
m = 18 | −0.7639 | (0.1159) | |
m = 19 | −0.5546 | (0.1058) | |
m = 20 | −0.2346 | (−0.0176) |
an = 136.
bSee Supplementary Methods and Supplementary Table S1 for details.
cSee text for details. Max(t) = 100.