Table 5.
List of SNPs significantly associated with seedling resistance to race TKTTF
| SNP | Chra | Pos (cM) | P value | R2 (%)b |
|---|---|---|---|---|
| IWB31876 | 0 | 0.0 | 8.08E-04 | 9.7 |
| IWB71333 | 4.84E-04 | 9.6 | ||
| IWB57448 | 1A | 21.5 | 8.57E-04 | 9.3 |
| IWA8622 | 24.4 | 2.26E-04 | 9.2 | |
| IWB22324 | 4A | 142.3 | 5.22E-06 | 9.1 |
| IWA4651 | 144.4 | 3.10E-08 | 8.8 | |
| IWB27971 | 1.97E-05 | 7.5 | ||
| IWB34478 | 3.37E-05 | 6.8 | ||
| IWB34733 | 1.54E-11 | 4.9 | ||
| IWB3569 | 3.95E-05 | 3.9 | ||
| IWB61312 | 3.95E-05 | 3.7 | ||
| IWB63979 | 1.19E-09 | 3.5 | ||
| IWB68386 | 8.24E-04 | 3.2 | ||
| IWA1505 | 145.2 | 1.15E-08 | 3.1 | |
| IWA3449 | 147.1 | 3.83E-05 | 3.9 | |
| IWB2554 | 1.61E-05 | 3.2 | ||
| IWB62397 | 3.09E-04 | 13.9 | ||
| IWB12146 | 150.7 | 5.47E-07 | 11.1 | |
| IWB47019 | 4.39E-07 | 9.2 | ||
| IWB59346 | 5.93E-06 | 8.7 | ||
| IWB1407 | 151.2 | 5.19E-05 | 8.1 | |
| IWB14910 | 3.47E-05 | 8.0 | ||
| IWB71978 | 3.47E-05 | 8.0 | ||
| IWB59368 | 151.3 | 3.14E-04 | 7.8 | |
| IWB68322 | 9.43E-06 | 7.6 | ||
| IWB53393 | 153.0 | 1.35E-04 | 7.6 | |
| SNP | Chra | Pos (cM) | P value | R2 (%)b |
| IWB35434 | 4A | 154.1 | 8.01E-04 | 7.5 |
| IWB51926 | 154.3 | 2.22E-04 | 7.5 | |
| IWB59099 | 9.09E-06 | 7.4 | ||
| IWB70193 | 5.34E-06 | 7.4 | ||
| IWB35545 | 163.8 | 9.37E-07 | 7.4 | |
| IWA1410 | 164.1 | 5.23E-08 | 7.1 | |
| IWA4084 | 2.39E-08 | 7.0 | ||
| IWA4858 | 4.55E-07 | 6.9 | ||
| IWA5353 | 1.49E-06 | 6.9 | ||
| IWA7364 | 2.46E-08 | 6.5 | ||
| IWA7365 | 1.38E-08 | 6.4 | ||
| IWB21715 | 5.74E-08 | 6.0 | ||
| IWB23332 | 2.85E-07 | 6.0 | ||
| IWB26256 | 2.37E-06 | 6.0 | ||
| IWB26495 | 1.85E-07 | 5.7 | ||
| IWB275 | 3.45E-07 | 5.7 | ||
| IWB27679 | 5.06E-04 | 5.4 | ||
| IWB29568 | 1.69E-07 | 5.4 | ||
| IWB3001 | 3.44E-07 | 5.3 | ||
| IWB31447 | 5.51E-07 | 5.0 | ||
| IWB34609 | 1.17E-06 | 4.9 | ||
| IWB36388 | 4.52E-07 | 4.9 | ||
| IWB4517 | 1.46E-05 | 4.9 | ||
| IWB48829 | 9.10E-07 | 4.9 | ||
| IWB49256 | 5.08E-07 | 4.7 | ||
| IWB52393 | 1.16E-06 | 4.2 | ||
| IWB6097 | 2.58E-06 | 3.9 | ||
| IWB72383 | 2.60E-08 | 3.7 | ||
| IWB9276 | 1.90E-07 | 3.7 | ||
| SNP | Chra | Pos (cM) | P value | R2 (%)b |
| IWA2224 | 5A | 88.0 | 8.03E-04 | 3.5 |
| IWA2836 | 94.9 | 5.08E-04 | 3.2 | |
| IWB34927 | 9.63E-04 | 3.2 | ||
| IWB72540 | 6B | 108.9 | 6.96E-04 | 3.5 |
| IWA3268 | 109.9 | 2.33E-04 | 3.2 | |
| IWA5605 | 3.19E-04 | 3.1 | ||
| IWA5606 | 9.46E-04 | 10.1 | ||
| IWB56595 | 2.40E-04 | 9.3 | ||
| IWB2749 | 110.4 | 7.59E-04 | 9.3 | |
| IWB2751 | 4.59E-04 | 8.3 | ||
| IWB43467 | 5.88E-04 | 7.4 | ||
| IWB48603 | 4.34E-04 | 7.3 | ||
| IWB50367 | 1.37E-04 | 6.7 | ||
| IWB56594 | 5.88E-04 | 6.7 | ||
| IWB61565 | 3.01E-04 | 6.7 | ||
| IWB65679 | 6.45E-04 | 6.1 | ||
| IWB43133 | 113.3 | 5.16E-04 | 5.3 | |
| IWB61528 | 5.16E-04 | 5.2 | ||
| IWB14375 | 113.7 | 1.68E-04 | 4.8 | |
| IWB1747 | 5.46E-04 | 4.7 | ||
| IWB30381 | 7.14E-04 | 4.4 | ||
| IWB41515 | 4.78E-05 | 4.2 | ||
| IWB57727 | 7.14E-04 | 4.2 | ||
| IWB58200 | 3.42E-04 | 4.2 | ||
| IWB59006 | 1.88E-05 | 4.2 | ||
| IWB59306 | 6.29E-07 | 4.1 | ||
| IWB70316 | 2.35E-04 | 4.1 | ||
| IWB72471 | 1.52E-04 | 4.1 | ||
| IWB9416 | 4.59E-06 | 4.1 | ||
| SNP | Chra | Pos (cM) | P value | R2 (%)b |
| IWA4245 | 6B | 114.4 | 2.10E-04 | 4.0 |
| IWA4246 | 116.2 | 8.75E-04 | 3.9 | |
| IWB28557 | 4.91E-04 | 3.9 | ||
| IWB59175.2 | 119.0 | 4.47E-04 | 3.9 | |
| IWB24880 | 120.3 | 1.35E-04 | 3.8 | |
| IWB24881 | 8.13E-04 | 3.7 | ||
| IWB41216 | 7.51E-04 | 3.7 | ||
| IWB24882 | 120.6 | 1.35E-04 | 3.5 | |
| IWB3553 | 5.79E-05 | 3.5 | ||
| IWB45581 | 2.20E-05 | 3.5 | ||
| IWB46893 | 9.30E-05 | 3.5 | ||
| IWB66027 | 5.14E-07 | 3.4 | ||
| IWB10711.2 | 121.8 | 2.38E-08 | 3.4 | |
| IWB23602 | 1.39E-04 | 3.4 | ||
| IWB23603 | 1.86E-04 | 3.4 | ||
| IWB40587 | 1.69E-04 | 3.4 | ||
| IWB44802 | 1.57E-06 | 3.3 | ||
| IWB73072 | 2.25E-08 | 3.3 | ||
| IWB48548 | 121.9 | 1.57E-06 | 3.3 | |
| IWB28880 | 122.1 | 1.57E-06 | 3.3 | |
| IWB44669 | 1.08E-07 | 3.3 | ||
| IWB464 | 7.18E-04 | 3.3 | ||
| IWB71190 | 122.2 | 2.71E-04 | 3.2 | |
| IWB43213 | 122.3 | 1.69E-04 | 3.2 | |
| IWB41217 | 122.9 | 6.96E-04 | 3.2 | |
| IWB47075 | 6.28E-09 | 3.2 | ||
| IWB34899.2 | 7A | 6.4 | 3.22E-05 | 5.0 |
aChr ‘0’ indicates unmapped SNPs that were significant in the analysis
bR2Indicates the percent of phenotypic variation explained by the significant locus